Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H24
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    69   9e-13
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   2.0  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   4.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   4.6  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   8.1  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   8.1  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    26   8.1  

>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
 Frame = +1

Query: 127 VVPWVNTEEWLKVMNLIYSENSDENEALKWLL-------LWKARCPSLPSGIESTLILLQ 285
           VVPW   E++L +M+  Y+E  +    L  L         W  R   +P  +EST  L+ 
Sbjct: 5   VVPWRLKEDFLYLMSCFYNEGQEGIPDLAALFRGVEIIQAWSTR-GRIPHSVESTSQLVS 63

Query: 286 VHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKA--AKNVGIPDWIV 459
             I          ND   +LA + +I RF++ +LD     +  +  A  AK++ +P + V
Sbjct: 64  SLIS---------NDRSQKLALAVSISRFVSGLLDPIQQSQYAIPMAVLAKSIDLPTYFV 114

Query: 460 ELRHDTAHNNNLPSLSLLRDATQFGLDWLKSNYW 561
           ELRH   H   LPSL +LR A Q  L WL  +YW
Sbjct: 115 ELRHAITHEE-LPSLPVLRQAAQRALSWLYDHYW 147


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 199 NEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFIN 378
           +EAL+ LLL   R P     IE  L     +    N    +  D    L+YS  ++    
Sbjct: 628 DEALR-LLLQSFRLPGESQLIERVLETFSHYYMSANPDSMSSKDAAFVLSYSIIMLNTDQ 686

Query: 379 HMLDVSITKENTLSKAAKNV-GIPD 450
           H  ++   +  TL    +NV G+ D
Sbjct: 687 HNPNIKSQRRMTLDDFCRNVRGVND 711


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 160 KVMNLIYSENSDENEALKWLLLWKARCPSLPSGIE 264
           ++++ +  +  ++ EA KW+LL   RCP+    +E
Sbjct: 342 RIIDRLVEQVKNDEEAEKWVLLNGQRCPTCDRVVE 376


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +1

Query: 379 HMLDVSITKENTLSKAAKNVGIPDWIVELRHDTAHNNNLPSLSLLRDATQFGLDWL 546
           H   +  +       +  N G+P W+ E       ++NLPSL  ++      L +L
Sbjct: 431 HWYGIDFSNLQDYINSLANYGLPIWLTEFACTNWDDSNLPSLDEVKTLMTSALGFL 486


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 601 RQETDSQEETRVMILVNFCISLSICSNSECKIK 699
           R+E     +T V  L+    +LSI + +ECK++
Sbjct: 26  RKELQGSRDTHVSYLIITKTNLSIFTRAECKVR 58


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 142 NTEEWLKVMNLIYSENSDENEALKWLLLWKA 234
           N +E +K +    +E  ++N+  KW  LWKA
Sbjct: 267 NKDENIKKIINYQTEEKNKNKQSKWQKLWKA 297


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 181 SENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSA 360
           S +S EN   KWL    + CP    G++  L+ L+    DL   D+   DH   + Y   
Sbjct: 96  SRDSLENVITKWLPEVSSNCP----GVKLVLVALKC---DLRGADEEQVDHSKIIDYEEG 148

Query: 361 I 363
           +
Sbjct: 149 L 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,422,798
Number of Sequences: 5004
Number of extensions: 68527
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)