Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H24
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452...    59   4e-09
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481...    29   6.4  
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476...    28   8.5  
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219     28   8.5  
06_01_1188 + 10219546-10219664,10220855-10223660                       28   8.5  

>12_01_0559 +
           4527769-4527924,4528038-4528129,4528799-4528905,
           4528987-4529042,4529196-4529346,4530223-4530528,
           4530753-4531597
          Length = 570

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
 Frame = +1

Query: 127 VVPWVNTEEWLKVMNLIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLN 306
           +VPW +  EW  V + ++S  +    AL+ +  W++R  +LP  ++ T   +++ ++D  
Sbjct: 25  LVPWSSWAEWRHVRDGLFS--ASPAAALRRIAAWRSR-GTLPVPVDVTAAFVEIRLRD-- 79

Query: 307 SPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKEN-TLSKAAKNVGIPDWIVELRHDTAH 483
                               R +N  ++    K   ++S+ A+ VGIP  +V++RH+++H
Sbjct: 80  -----------------PFFRLVNGFVENPHKKTGYSISELAEAVGIPRVLVDIRHESSH 122

Query: 484 NNNLPSLSLLRDATQFGLDWLKSNYWKEHKLLITD 588
              LPSL LLR A     DWLK  YW      I D
Sbjct: 123 RT-LPSLRLLRLAAIKAFDWLKCIYWDSQTNAIPD 156


>01_06_1656 +
           38946922-38947542,38947640-38947739,38948045-38948189,
           38948868-38948991,38949443-38949960,38950111-38950458,
           38950557-38950638,38951309-38951707,38951790-38951927,
           38952063-38952108,38952200-38952369
          Length = 896

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 394 SITKENTLSKAAKNVGIPDWIVELR-HDTAHNNNLPSLSLLRDATQF 531
           ++++EN   K+A +V +    VEL+ H T H N LP+ S+ R   QF
Sbjct: 558 NLSQENEPDKSANDVDMLP-AVELQFHGTNHANPLPTRSIKRKLLQF 603


>10_08_0680 -
           19846481-19846767,19847192-19847379,19847467-19847666,
           19847799-19848060,19848652-19848758
          Length = 347

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 494 RLLLWAVSCLNSTIQSGIPTFFAALDNVFSLVMDT 390
           + LLWAV  + +   S     F  + NVFS+V++T
Sbjct: 266 QFLLWAVWAVMTKHPSCFKILFVIIGNVFSIVLET 300


>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
          Length = 215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 232 ARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKEN 411
           A C   P  + S  ++     Q L    +N  D  L  A  +   + ++H++D+  TK+N
Sbjct: 32  ATCGDGPGYLRSAGVIYS-RSQHLMLVQNNNGDTPLHCAVRAGHSKMVDHLIDLVETKDN 90

Query: 412 TLSKA 426
           + S A
Sbjct: 91  SPSSA 95


>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 694 IKTLADIVDVDMRDSIINDARDLIGDNIQLSNL 792
           IK ++ I   D RDS + DAR+  G N   S L
Sbjct: 133 IKPISSITTEDERDSYLEDARNQSGSNTDESEL 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,228,076
Number of Sequences: 37544
Number of extensions: 382654
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)