Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H24
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)                     33   0.40 
SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)                      33   0.40 
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)                29   5.0  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_43571| Best HMM Match : Ank (HMM E-Value=3e-34)
          Length = 584

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +1

Query: 172 LIYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAY 351
           L ++ + D ++ ++WLL    +  +   G E T   L  +  D+N  D  G   ++  A 
Sbjct: 178 LHWAVDGDRDDCIRWLLNCGVKVIATVDGSEHTARTLLDYGADVNKRDKTGRTALMAAAL 237

Query: 352 SSAI---MRFINHMLDVSITKENTLSKAAKNVGIPDWIVELR 468
           +  +      I H  D ++T E ++  ++   G+   ++E R
Sbjct: 238 NGNLRLCQLLIQHGADQTLTNEVSIKASSGTQGVAGSLMEER 279


>SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)
          Length = 406

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -3

Query: 515 LSSDNEGRLLLWAVSCLNSTIQSGIPTFFAALDNVFSLVMDTSN 384
           LS +   R+ L A   LNS   +  P+FF ALD V SL  D SN
Sbjct: 52  LSKEVPHRVSLPACHLLNSLTSTVRPSFFIALDKVQSLYRDISN 95


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 9/37 (24%), Positives = 26/37 (70%)
 Frame = -3

Query: 716  TMSAKVLILHSELEQILNEMQKFTNIITLVSSWLSVS 606
            T+  K++   S+L+++  + +KF N++ ++++WL+ +
Sbjct: 2104 TLCVKLMNTSSKLDELQEQSEKFYNVLRIITTWLNTT 2140


>SB_17215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 214 WLLLWKARCPSLPSGIESTLI 276
           WL LWK+R  S  SG+++TL+
Sbjct: 58  WLSLWKSRVDSACSGLKATLL 78


>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
          Length = 474

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 646 VNFCISLSICSNSECKIKTLADIVDVDMRDSIINDARDLI 765
           +N C+   +CS     IK+  D+ D+   DS++N   D++
Sbjct: 47  LNGCLKCPVCSEHAVNIKSPRDVEDLPC-DSLLNSVLDMV 85


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 265  STLILLQVHIQDLNSPDDNGNDHVLRLAYSSAI---MRFINHMLDVSITKEN 411
            +T + L+  I  L +P D G+DH+    Y S+    ++  +  L+V +TK+N
Sbjct: 1889 ATDVALEKGIYILYTPSDEGDDHIEWYIYPSSTYIDLKKTHIRLEVKLTKDN 1940


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,613,257
Number of Sequences: 59808
Number of extensions: 486745
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)