Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H24
         (874 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    36   0.002
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   7.0  
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    24   7.0  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 115 SNCVVVPWVNTEEWLKVMNLIYSENSDENEALKWLLL 225
           SN + VPW+ T E L+++ ++++ N  E  +L W LL
Sbjct: 730 SNAIQVPWLRTVERLRLLGILFTNNVREAMSLNWDLL 766



 Score = 24.6 bits (51), Expect = 4.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 172  LIYSENSDENEALKWLLLWKARCPSLPSGIE-STLILL 282
            L+  + S EN ++ W LLW+    S  S ++ STL LL
Sbjct: 926  LLEPKVSLENPSVNWRLLWRNIHRSCLSSLQRSTLFLL 963


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +1

Query: 442  IPDWIVELRHDTAHNNNLPSLSL-LRDATQFGLDWLKSNYWKEHKLLITDYKSGRQETDS 618
            + D + EL       + L   S  LRD TQ   D  KS +   HKL  T + + R +   
Sbjct: 933  LEDVVEELEGKNRERDELIRYSTALRDLTQMMRDIRKSRFSHLHKL--TTHMALRVK--- 987

Query: 619  QEETRVMILVNFCISLSICSNSECKIKTLADIVDVDMRDSI 741
             + T +M + N+   L + +  EC++       D ++++++
Sbjct: 988  HKFTNIMQIRNYLGKLRV-NQEECRLSLSVVPRDANVQNAV 1027


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 175 IYSENSDENEALKWLLLWKARCPSLPSGIESTLILLQVHIQDLNSPDDNG 324
           + S +S EN   KW    K  CP  P  +  T I L+   + ++   D G
Sbjct: 87  VASPSSFENVTSKWYPEIKHHCPDAPIILVGTKIDLREDRETISLLADQG 136


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,027
Number of Sequences: 2352
Number of extensions: 16844
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 93439926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)