Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H23
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   7.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.7  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 487 RFWCDGRLMTAPHPGVFLLTL 549
           +FW D RL     PGV  L++
Sbjct: 94  QFWTDPRLAYGKRPGVETLSV 114


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 482  RPANTSHLRVTRRDAIAPCPAAPTLAFPT 396
            RPA T H+R+   + I     + T+   T
Sbjct: 962  RPATTYHIRIVAENEIGSSEPSETVTIIT 990


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 547 LALIC-GTCALHFAFDCPFLAVRV 615
           L L+C G   +H  F CPF+   V
Sbjct: 71  LFLLCSGYFTVHLLFYCPFIIFTV 94


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 403 SQLTFQPFSRFP 368
           +QL ++PFS FP
Sbjct: 689 TQLIYRPFSHFP 700


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 530 PGCGAVMSRPSH 495
           PGCG V  + SH
Sbjct: 320 PGCGKVYGKTSH 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,037
Number of Sequences: 336
Number of extensions: 3083
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)