Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H23
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 37 0.019
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 35 0.100
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 34 0.13
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 34 0.13
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 33 0.23
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 30 2.1
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421... 30 2.1
09_06_0184 - 21413275-21414267 30 2.8
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 29 3.8
05_04_0343 - 20437780-20438009,20438576-20438666 29 5.0
04_01_0559 - 7175828-7176195,7176262-7176973,7178028-7178201,717... 29 5.0
09_04_0416 - 17399059-17399777,17400560-17400704 29 6.6
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 29 6.6
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 37.1 bits (82), Expect = 0.019
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 448 RVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRV---- 615
RV R+ RF C GRL+ P +LT++LI AL AF LA +
Sbjct: 40 RVRRRGPCMHAGERFLCGGRLIFGPDASSIVLTVSLIMTPLALFVAFVSFHLAALIGKPL 99
Query: 616 SAAVPAVGAALFV 654
AVPAV A+ V
Sbjct: 100 GQAVPAVAIAVGV 112
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 34.7 bits (76), Expect = 0.100
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 569 HVPQMSASVSRKTPGCGAVMSRPSHQNRFRPANTSHLR 456
H+P S S R+ G GA++ RP H+ R P H R
Sbjct: 25 HLPLCSPSPRRRHAGGGALLLRPPHRRRAEPGGVRHAR 62
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +1
Query: 436 MASRRVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRV 615
MA + R ++V+ G N C GR + P LL+ +LI A+ A C F+A +
Sbjct: 1 MAMAKQQRVYQVWKGNNIILCGGRFIFGPDAKATLLSFSLI----AIPVAVFCYFVARHL 56
Query: 616 SAAVPAVGAALFVLTL 663
PA A +L +
Sbjct: 57 IHMFPAYNAGYAILAV 72
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 34.3 bits (75), Expect = 0.13
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSAAVPAV 636
R +E + G NRF+ GRL+ P L ++ALI A+ C F+A + PA
Sbjct: 12 RVYEAWKGNNRFFFGGRLIFGPDAKSLLFSVALIFVPVAVF----CAFVARNLRHQFPAY 67
Query: 637 GAALFVLTL 663
A +L +
Sbjct: 68 NAGYAILAV 76
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAF 588
R ++V+ G N F C GRL+ P LL++ LI G A+ F++
Sbjct: 21 RLYQVWKGNNIFLCGGRLIIGPDAASLLLSMFLILGP-AIVFSY 63
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 588 EREVQRARAADERQCEQEDAGVRCSHEPPVAPEP-VSPREHFPLARHAPRRHRTMSCRSH 412
+ E+ RA AA + + D EP V EP +S + ++P P+ R + CR
Sbjct: 360 DEELARAVAASLEESKGSDTSEE-KIEPEVENEPSLSAKLNYPPLPEEPKGSRELLCRVA 418
Query: 411 SRVPNSR 391
R+P+ R
Sbjct: 419 IRLPDGR 425
>03_06_0498 -
34341441-34341575,34341808-34341945,34342019-34342117,
34342320-34342400,34342548-34342610,34342717-34342764,
34343033-34343410,34345413-34345537,34345635-34345701,
34345797-34345856,34346495-34346621,34346670-34346986
Length = 545
Score = 30.3 bits (65), Expect = 2.1
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Frame = -3
Query: 506 RPSHQNR--FRP-ANTSHLR--VTRRDAIAPCPAAPTLAFPTHVSAFLKISPL-IVVSSE 345
RP++ R F P A H+R R A+AP A P + S+F KI+PL I +S+E
Sbjct: 92 RPNYSRRRFFYPGARCGHMRRAARRPPAVAPEMARPGRSSRGRPSSFRKIAPLSISLSAE 151
Query: 344 ID----YNLSCILLLLIA 303
+ ++LS I L L+A
Sbjct: 152 LSGTTWFSLSSIQLGLVA 169
>09_06_0184 - 21413275-21414267
Length = 330
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 585 REVQRARAADERQCEQEDAGVRCSHEPPVAPEPVSPREHFPLARHAPRRHRTMSC 421
R+V R +AD + E + EPPV+P P P P+A RR ++ C
Sbjct: 173 RDVPRHESADGSEIHDEHHVIITGEEPPVSPVPREP----PVAHVRNRRPISLLC 223
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +1
Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALI-------CGTCALHFAFDCPFLAVRV 615
R +E + G NRF GRL+ P L++++LI C A H F
Sbjct: 7 RVYEAWKGNNRFLFGGRLIFGPDAKSLLVSVSLIVVPVLVFCVFVARHLRHQ--FSTYNA 64
Query: 616 SAAVPAVGAALFVL 657
A+PAV A LF++
Sbjct: 65 GYAIPAV-AVLFMI 77
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 481 RNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFD 591
R WCDG + P FLL A ICG A A D
Sbjct: 3 RPHAWCDG----STSPAAFLLAAAAICGQFATGLAGD 35
>04_01_0559 -
7175828-7176195,7176262-7176973,7178028-7178201,
7178814-7178891
Length = 443
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 481 RNRFWCDGRLMTAPHPGVFLLTLALIC 561
RNR+W R PG LLTL +C
Sbjct: 77 RNRYWKTPRFAVVDEPGSRLLTLQFLC 103
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 567 RAADERQCEQEDAGVRCSHEPP--VAPEPVSPREHFPLARHAPRRHRTMSCRSHS 409
R+ +R+ +E A R PP AP P+ P +P RHR+ CR S
Sbjct: 202 RSWKKREAGEEGAAARWGERPPDLAAPPPLRPAP-------SPPRHRSARCRRRS 249
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 28.7 bits (61), Expect = 6.6
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 340 SISELTTIKGEILRKAET*VG-NARVGAAGHGAMASRRVTRKWEVFAGRNRFWCDGRLMT 516
S+ EL IK IL V N V AG A R+ ++W + A D +T
Sbjct: 1689 SVDELGNIKTTILSTRLDGVWWNVLVEVAGALYYADSRMKKQWLLDA------LDIGCVT 1742
Query: 517 APHPGVFLLTLALICGTCALH 579
A HP L + L+CG+C ++
Sbjct: 1743 A-HPSTVLHFVGLLCGSCCIY 1762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,190,803
Number of Sequences: 37544
Number of extensions: 353349
Number of successful extensions: 1309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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