Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H23
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)               73   3e-13
SB_33608| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               30   2.2  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)                      29   5.0  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   5.0  
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)                     28   8.7  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
          Length = 288

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 34/69 (49%), Positives = 44/69 (63%)
 Frame = +1

Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSAAVPAV 636
           R WEVF GRN+F+CDGR++ A + GVF  T+ LI  T  L FAFD  +L   +S AVP +
Sbjct: 18  RNWEVFPGRNKFYCDGRIIMARNNGVFYFTVILIVITTGLFFAFDSVYLFKHLSPAVPII 77

Query: 637 GAALFVLTL 663
            A LF   +
Sbjct: 78  AAWLFFFVM 86


>SB_33608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = +1

Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAF 588
           R WEVF GRN+F+CDGR++ A + GVF  T+ LI  T  L FAF
Sbjct: 18  RNWEVFPGRNKFYCDGRIIMARNNGVFYFTVILIVITTGLFFAF 61


>SB_25059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = -3

Query: 599 KGQSNAKCSAHVPQMSASVSRKTPGCGAVMSRPSHQNRFRPANTSHLRVT-----RRDAI 435
           KG++ +K +A + +++ S+++     G  M RPS  N   P  TS    T         I
Sbjct: 149 KGETGSKLTAGIHRIADSITK----AGKNMMRPSSPNSQAPTTTSPTSPTPLLPPSAPPI 204

Query: 434 AP--CPAAPTLAFPTHVSAFLKISP 366
            P  CP +PT+A PT +   L   P
Sbjct: 205 QPVACPTSPTIASPTKLKRELPHPP 229


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 504 PVAP---EPVSPREHFPLARHAPRRHRTMSCRSH-SRVPNSR 391
           P AP   +P++PR   P    APR HR +S R H    P SR
Sbjct: 68  PTAPRPHDPIAPRPRSPHGPVAPRPHRPISPRPHRPTTPPSR 109


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 555 ERQCEQEDAGVRCSHEPPVAPEPVSPREHFPLARHAPRRHRTMSCRSHSRVPNSR 391
           E + E+E+      H   ++PEP           H+P  HR    RS SR P  R
Sbjct: 180 EEEEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRR 234


>SB_43682| Best HMM Match : CcoS (HMM E-Value=4.1)
          Length = 187

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 465 PLARHAPRRHRTMSCRSHSRVPNSRFSLS-QDFPFDS 358
           P +RH  RR R  S  + S VPNSR SL  Q F   S
Sbjct: 92  PPSRHDKRRRRYSSSTAASSVPNSRPSLDIQAFTIQS 128


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 516 SHEPPVAPEPVSPREHFPLARHAPRRHRTMSCRSHS 409
           SH P     P +   H P  RHAPR+ R M+  S S
Sbjct: 113 SHVPSTRHAPTA--SHVPSTRHAPRKQRRMATLSLS 146


>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
          Length = 727

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 588 EREVQRARAADERQCEQEDAGVRCSHEPPVAPEPVSPRE 472
           ERE + AR   ++Q + ED     SHEP V+ EP +P+E
Sbjct: 460 EREAEEAR---QQQEDAEDEYETVSHEP-VSEEPSAPQE 494


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 564  AADERQCEQEDAGVRCSHEPPVAPEPVSPREHFPLARHAPRR 439
            A  ++Q   +D   + +HEP   PEP + R   P    A RR
Sbjct: 1045 AEPDKQAADDDHHQKTAHEPARTPEPPATRPKHPGRVEAGRR 1086


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,090,670
Number of Sequences: 59808
Number of extensions: 362768
Number of successful extensions: 1390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)