Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H23
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 395 HVSAFLKISPLI-VVSSEIDYNLSCILLL-LIARILFQNKKL*KQIKLV 255
           H +  L ++P   VVSS I + + CI++L +  R+    +K  K I+ V
Sbjct: 181 HPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAV 229


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 482  RPANTSHLRVTRRDAIAPCPAAPTLAFPT 396
            RPA T HLR+   + I     + T+   T
Sbjct: 943  RPATTYHLRIVAENEIGASDPSDTVTIIT 971


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 487 GFAPRTLPTCASRAATPSHHVLPLPLSRSQLT 392
           G +P + P   S AAT S    P P S +  T
Sbjct: 820 GNSPASSPRYLSAAATSSTSTSPRPASSTAAT 851


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,460
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)