Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H23
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ...    36   0.047
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    35   0.083
At5g05070.1 68418.m00538 zinc finger (DHHC type) family protein ...    31   0.77 
At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein ...    31   0.77 
At5g66840.1 68418.m08427 SAP domain-containing protein contains ...    31   1.0  
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    30   1.8  
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    30   1.8  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    29   5.4  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   5.4  
At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    28   9.5  

>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 338

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = +1

Query: 436 MASRRVTRK--WEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFL 603
           M+S+ + R+  ++V+  +N+F+C GRL+  P     LLT  +I G  A+ F+    +L
Sbjct: 1   MSSQNLERQRIYQVWPAKNKFYCGGRLVFGPDASSLLLTTCMIGGP-AIAFSIRMAYL 57


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 448 RVTRKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHF 582
           ++ R ++V+ G N+F C GRL+  P      L+  LI G   + F
Sbjct: 7   KLKRLYQVWRGSNKFLCGGRLIFGPDASSLYLSTILILGPAVMFF 51


>At5g05070.1 68418.m00538 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 339

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 457 RKWEVFAGRNRFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFLAVRVSAAVP-- 630
           R ++ + G NRF C GRL+  P      LT  LI G  AL F   C  + V +    P  
Sbjct: 37  RFYKAWKGNNRFCCGGRLIFGPDVSSLYLTSFLI-GAPALTF---CIRMLVWIKRGDPFF 92

Query: 631 --AVGAALFVLTL 663
              V A+ F+LTL
Sbjct: 93  NYTVLASGFILTL 105


>At2g40990.1 68415.m05063 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 386

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 487 RFWCDGRLMTAPHPGVFLLTLALICGTCALHFAFDCPFL 603
           RF+C GRL+  P     LLT A+I G  AL F     FL
Sbjct: 13  RFYCGGRLVFGPDASSLLLTTAMIGGP-ALTFCIRMVFL 50


>At5g66840.1 68418.m08427 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 551

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 516 SHEPPV-APEPVSPREHFPLARHAPR 442
           SH PP  AP P +PR + P+  H PR
Sbjct: 347 SHAPPTYAPRPHAPRSYAPINSHLPR 372


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 591 VEREVQRARAADERQCEQEDA-GVRCSHEPPV-APEPVSPREHFPLARHAPRRHRTMSCR 418
           +ERE +R R  D     + D  G R S+     + +   PR+H+P  R+AP   R +S R
Sbjct: 165 LEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPPGDRFVSDR 224


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 591 VEREVQRARAADERQCEQEDA-GVRCSHEPPV-APEPVSPREHFPLARHAPRRHRTMSCR 418
           +ERE +R R  D     + D  G R S+     + +   PR+H+P  R+AP   R +S R
Sbjct: 165 LEREREREREFDRYMDGRRDRDGGRYSYRDRFDSGDKYEPRDHYPFERYAPPGDRFVSDR 224


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -2

Query: 576 QRARAADERQCEQEDAGVRCSHEPPVAPEPVSPREHFPLARH--APRRHRTMSCR-SHSR 406
           +RA+A  +R  E+   GV+     PVAP+P  P ++    RH    R H    C+ SH  
Sbjct: 321 KRAKARIKRAQERIALGVKKLKLKPVAPKP-KPIKY---CRHYLKGRCHEGDKCKFSHDT 376

Query: 405 VPNSRFSLSQDFPFDSC 355
           +P ++ S    F   SC
Sbjct: 377 IPETKCSPCCYFATQSC 393


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = -2

Query: 570 ARAADERQCEQEDAGVRCSHEPPVAPE-PVSPREHFPLARHAPRRHR--TMSCRSHSRVP 400
           AR AD+R  E +D   R     P  PE P+   +H P        H+    S  +  R P
Sbjct: 132 ARRADQRGDEDDDVSPRPFGTQPKTPEHPLRTPQHRPRTPQHRSAHQEDAFSLETRPRTP 191

Query: 399 NSRFSLSQDFP 367
             R + S   P
Sbjct: 192 ERRSNTSDTRP 202


>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 538 LLTLALICGTCALHFAFDCPFLAVRVSAAVP 630
           LLTL L+C  C L    + PF  +  +A++P
Sbjct: 35  LLTLLLLCSICFLFLTLNFPF-TIEFTASIP 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,115
Number of Sequences: 28952
Number of extensions: 256737
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)