Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H22
         (932 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.047
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   7.1  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 35.9 bits (79), Expect = 0.047
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 187 KTDELIKLDNWYQNELPXKIKSR 255
           K ++L++LDNW+Q ELP  I SR
Sbjct: 34  KAEQLLELDNWFQQELPVSISSR 56


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 580 PXXXPKXGGGXPPPXXXFFXGGGXPKKKXPXFXG 681
           P   P  GG  PPP      GGG P    P F G
Sbjct: 678 PPPPPLPGGAAPPPPPPI--GGGAPPPPPPGFGG 709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,441
Number of Sequences: 59808
Number of extensions: 245952
Number of successful extensions: 351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)