Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H21
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    27   5.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = +1

Query: 214 PP--PXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXA 348
           PP  P    P  PP GN      PP P     P  PP+    L P A
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVP---TPPSLPPSAPPSLPPSA 435


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 348 PGXVXEVXXCINESAPPRGPXXWXWGR 428
           P  + E   C    A PRGP  + WG+
Sbjct: 293 PDELRECDRCGTRFADPRGPCTYHWGK 319


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
 Frame = +2

Query: 218 PPDXGXPXXPHXETXPPXGXPRTPXXXRP-PXFRPQXRXXCXPXP 349
           PP    P  P  E  PP   P  P    P P   P       P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.145    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,710
Number of Sequences: 5004
Number of extensions: 18952
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)