Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H21
(958 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 31 1.4
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.8
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.4
04_03_0904 + 20717005-20718087 30 3.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.1
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 29 5.5
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 7.2
04_04_1125 + 31085106-31085714 29 7.2
03_01_0515 - 3864796-3865425 29 7.2
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 28 9.6
03_01_0023 + 198414-198968 28 9.6
01_01_0070 - 542603-542686,542803-543441 28 9.6
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 31.1 bits (67), Expect = 1.4
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGKLXLRXASPXPLGXGXPLXSARXXGXPVXXGP 350
P PP + PP P P G P+ SA G PV GP
Sbjct: 437 PPPPESTSPPPPPTSDPPPVPPPPPTTGSFMPIPSAPFAGLPVPAGP 483
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.8
Identities = 33/117 (28%), Positives = 35/117 (29%), Gaps = 8/117 (6%)
Frame = -3
Query: 539 GIPXGXGXPGDRLXGGGXRXPPPYXRXXRVXXRGS------GRAXXXXXRXXPGGGRFIY 378
G P G G R GGG PP G+ G R GGG
Sbjct: 96 GAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGG 155
Query: 377 AXXNLPHXXR--AXGHRXXAXAGGXXGXAXXXGXGGXXXEXQFPXGGXXGXXXXGGG 213
A P R A G GG G GG + P GG G GGG
Sbjct: 156 ALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGG 212
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.4
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGG 367
PPP G P P + PP P+ P PP P P P GG
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP---PPGGKKGGPPPPPPKGG 385
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/69 (27%), Positives = 22/69 (31%)
Frame = +1
Query: 235 PXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MNRPPPGXXRX 414
P PP + PP P A P PP P A+ + PPP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 415 GXGGALPLP 441
GG P P
Sbjct: 373 KKGGPPPPP 381
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPR-TPXXXRPPXFRPQXRXXCXP 343
PPP P P PP P TP PP ++PQ + P
Sbjct: 93 PPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAP 136
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 217 PPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXP 315
PP P PP GN + PP P P P
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLP 576
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQ-XRXXCXPXPGXGXGG 367
P P G P PH E+ PP +TP +P + R P G GG
Sbjct: 64 PSPPAGKPTKPHPESTPP---TKTPARSKPAAAAAEKPRPSVAPESTNGGGG 112
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.7 bits (61), Expect = 7.2
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +1
Query: 184 KKKXXXXXGXPPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXA 327
K K G PPP P PP + PP P P PP A
Sbjct: 210 KPKLKGPKGAPPPP---PPPPPSPHRHPAAHPPPPPHHPAPRPPPPMA 254
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXA 327
PPP P P PP P A P PP A
Sbjct: 65 PPPATPTPPTPTPWTPTPATPPPTPATPATPTTPPTPA 102
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXP 342
PPP P PP S P P P PPA + P
Sbjct: 61 PPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPP 103
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 348 GXGXQXXRXCGRXXGGRXXXGVR-GXPXGGXVSXWGXXGXPXSGGG 214
G G R GR GG G G GG V G G P GGG
Sbjct: 9 GRGRGRGRGGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGG 54
>03_01_0023 + 198414-198968
Length = 184
Score = 28.3 bits (60), Expect = 9.6
Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = -2
Query: 357 PXPGXGXQXXRXCGRXXGGR-XXXGVRGXPXGGXVSXWGXXGXPXSGGG 214
P PG G G GGR G G GG S G G SGGG
Sbjct: 33 PSPGGGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGGGGSGGGGSGGG 81
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 9.6
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = +1
Query: 175 PKXKKKXXXXXGXPPPXXXXPXXPPXGNXXSXXXPPX-PXXXAXPXXPPAXAXXLXPXA 348
P KK PPP P PP + PP P P PA A P A
Sbjct: 84 PPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPA 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.145 0.479
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,293
Number of Sequences: 37544
Number of extensions: 346156
Number of successful extensions: 1435
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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