Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H21
(958 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 1.0
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.8
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 2.4
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 3.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3) 29 4.2
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 5.6
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 29 7.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 9.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 9.7
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 28 9.7
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP + PP P A P PP
Sbjct: 924 PPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPP 958
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/75 (32%), Positives = 26/75 (34%)
Frame = +1
Query: 217 PPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MNRPP 396
PP P PP + PP P A P PP P G + PP
Sbjct: 914 PPGGSVPPPPPPPGGNAPLPPPPPGGSA-PSQPPPPGGNAPPPPPPPGG-------SAPP 965
Query: 397 PGXXRXGXGGALPLP 441
PG GGA PLP
Sbjct: 966 PG------GGAPPLP 974
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.5 bits (68), Expect = 1.0
Identities = 23/86 (26%), Positives = 26/86 (30%)
Frame = +1
Query: 208 GXPPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MN 387
G PPP PP G PP P P PP P +
Sbjct: 344 GAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGR--PPSSLGNPPPPPPPGRG 401
Query: 388 RPPPGXXRXGXGGALPLPRXXTRXXR 465
PPPG G G L + T+ R
Sbjct: 402 APPPGPMIPGRAGLLSQIQMGTQLKR 427
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = +2
Query: 209 AXPPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGF 370
A PPP P PP P P PP P P P G GGF
Sbjct: 658 AGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPP-PPPIGGGAPPPPPPGFGGF 710
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 30.3 bits (65), Expect = 2.4
Identities = 32/112 (28%), Positives = 35/112 (31%)
Frame = -3
Query: 548 RXXGIPXGXGXPGDRLXGGGXRXPPPYXRXXRVXXRGSGRAXXXXXRXXPGGGRFIYAXX 369
R G G G G GGG R Y R RG GR GGG +
Sbjct: 128 RGGGYGGGRGGGGGYRSGGGYRGGGGY-RGGGGGYRGRGRGGGGYGGGGYGGGGY----G 182
Query: 368 NLPHXXRAXGHRXXAXAGGXXGXAXXXGXGGXXXEXQFPXGGXXGXXXXGGG 213
H G GG G + G GG + GG G GGG
Sbjct: 183 GGGHGGGGYGGGGYGGGGGGYGGSGYGGGGG------YGGGGYGGGRSGGGG 228
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
PPP+ P P+ PP P P PP P P P
Sbjct: 134 PPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPP 178
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP S PP P P PP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPP 405
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP PP P A P PP
Sbjct: 391 PPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXL 336
PPP P PP PP P P PP A L
Sbjct: 396 PPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRL 436
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP + PP P P PP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXP 342
PPP P PP PP P P PP A P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP PP P P PP
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
PPP P P PP P P +PP P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXAR 351
PPP P PP PP P P PP P R
Sbjct: 390 PPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALR 435
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXP 343
PPP P P PP P PP P R C P
Sbjct: 398 PPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAP 440
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +2
Query: 209 AXPPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
A PPP P P PP P P PP Q P P
Sbjct: 63 AAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAP 109
>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
Length = 169
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 218 PPDXGXPXXPHXETXPPXGXPRTPXXXRPP 307
PP P P+ + P PR P RPP
Sbjct: 30 PPSESRPRPPYDDRPPSESRPRPPYDERPP 59
Score = 28.7 bits (61), Expect = 7.4
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 218 PPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQ 322
PP P P+ E P PR P P RP+
Sbjct: 44 PPSESRPRPPYDERPPSESRPRPPYERPPSESRPR 78
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP PP G + PP P P PP
Sbjct: 283 PPPLTGGMLPPPFGGHPAAAPPPPPLPAGVPAPPP 317
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRT--PXXXRPPXFRPQXRXXCXPXP 349
PPP G P P PP P T P PP P C P
Sbjct: 378 PPPTNGPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPPSEGKCGRKP 424
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGKLXLRXASPXPLGXGXPLXSARXXGXPVXXGP 350
P PP GPP P G + P P G P G P GP
Sbjct: 72 PGPPGFQGPPGNPAGAIG-PPGLPGPNGVNGPPGELGDMGPPGPPGP 117
Score = 28.7 bits (61), Expect = 7.4
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGKLXLRXASPXPLGXGXPLXSARXXGXPVXXGPGXVXEVXXCINES 389
P PP GPP P G + P P G P G P GP + E+
Sbjct: 434 PGPPGINGPPG-PLGDVG-PPGLPGPPGPQMPPGPPGLPGAPGPNGPPGINGPLGPPGEA 491
Query: 390 APPRGP 407
PP P
Sbjct: 492 GPPGNP 497
Score = 28.7 bits (61), Expect = 7.4
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGKLXLRXASPXPLGXGXPLXSARXXGXPVXXGPGXVXEVXXCINES 389
P PP GPP P G + P P G P G P GP + E+
Sbjct: 519 PGPPGINGPPG-PLGDVG-PPGLPGPPGPQMPPGPPGLPGAPGPNGPPGINGPLGPPGEA 576
Query: 390 APPRGP 407
PP P
Sbjct: 577 GPPGNP 582
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 28.7 bits (61), Expect = 7.4
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +2
Query: 218 PPDXGXPXX--PHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGFXLHK*IG 391
PP P PH T P P TP RP RP P G H+ I
Sbjct: 38 PPSHHGPISLRPHRPTIPSPHDPITPRPHRPTAPRPHDPIAPRPRSPHGPVAPRPHRPIS 97
Query: 392 PPP 400
P P
Sbjct: 98 PRP 100
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Frame = +2
Query: 215 PPPDX--GXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
PPP G P P PP G P P PP +R P P
Sbjct: 460 PPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPPRGMPPP 506
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGK-LXLRXASPXPLGXGXPLXS---ARXXGXPVXXGPGXVXEVXXC 377
P P + GPP P G+ R +P P G PL + P GP E
Sbjct: 207 PPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPP 266
Query: 378 INESAPPR 401
N PP+
Sbjct: 267 KNAPPPPK 274
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +3
Query: 210 PXPPXTXGPPXXPXGK-LXLRXASPXPLGXGXPLXS---ARXXGXPVXXGPGXVXEVXXC 377
P P + GPP P G+ R +P P G PL + P GP E
Sbjct: 119 PPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPP 178
Query: 378 INESAPPR 401
N PP+
Sbjct: 179 KNAPPPPK 186
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.3 bits (60), Expect = 9.7
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPP 307
PPP G P P PP G P PP
Sbjct: 307 PPPPGGAPPPPPPPPPPPPGDGGAPPPPPPP 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.145 0.479
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,345,010
Number of Sequences: 59808
Number of extensions: 239984
Number of successful extensions: 958
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2812459436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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