Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H21
         (958 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.92 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.92 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.92 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    31   0.92 
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    31   1.6  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    30   2.8  
U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   3.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U58758-7|AAO38576.1|  220|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.9  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/63 (31%), Positives = 20/63 (31%)
 Frame = +2

Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGFXLHK*IGP 394
           PPP  G P        PP      P    PP   P       P P    GGF       P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788

Query: 395 PPG 403
           PPG
Sbjct: 789 PPG 791


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/63 (31%), Positives = 20/63 (31%)
 Frame = +2

Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGFXLHK*IGP 394
           PPP  G P        PP      P    PP   P       P P    GGF       P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 788

Query: 395 PPG 403
           PPG
Sbjct: 789 PPG 791


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/63 (31%), Positives = 20/63 (31%)
 Frame = +2

Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGFXLHK*IGP 394
           PPP  G P        PP      P    PP   P       P P    GGF       P
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPP 371

Query: 395 PPG 403
           PPG
Sbjct: 372 PPG 374


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 22/78 (28%), Positives = 25/78 (32%)
 Frame = +1

Query: 208 GXPPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MN 387
           G P P    P  PP  N  +   PP P     P  PP       P        F     N
Sbjct: 687 GQPRPAGLPPGVPPMFNLNA---PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFD---PN 740

Query: 388 RPPPGXXRXGXGGALPLP 441
           +PPP   + G     P P
Sbjct: 741 KPPPPMFQQGFNAGAPPP 758


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -2

Query: 318 GRXXGGRXXXGVRGXPXGGXVSXWGXXGXPXSGGGXA 208
           G   GG    G+RG P GG     G  G P   GG A
Sbjct: 539 GAYGGGGFRGGMRGSPRGGMGGGGGFRGGPPGRGGMA 575


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/71 (32%), Positives = 23/71 (32%)
 Frame = -2

Query: 426 APTPXPXXPGGGPIHLCKXKPPXPXPGXGXQXXRXCGRXXGGRXXXGVRGXPXGGXVSXW 247
           AP P P   GGG    C         G G      CG   GG    G  G   GG     
Sbjct: 110 APPPPPPACGGG----CGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGG 165

Query: 246 GXXGXPXSGGG 214
           G  G    GGG
Sbjct: 166 GGGGCGGGGGG 176


>U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical
           protein ZK180.5a protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
 Frame = -2

Query: 462 GXASXRAXXRKSAPTPXPXXPGGGPIHLCKXKPPXPXPGXGXQXXRXC--GRXXGGRXXX 289
           G AS  A    +A  P P    G P       PP P P  G         G   GG+   
Sbjct: 41  GGASAAAYAAPAAGYPRPPIGYGAP------PPPPPPPAFGGLGGGAAYPGAGAGGQYDT 94

Query: 288 GVRGXPXGGXVSXWGXXG 235
           GV G   GG     G  G
Sbjct: 95  GVHGGAQGGYAGAQGAQG 112


>U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK180.5b protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
 Frame = -2

Query: 462 GXASXRAXXRKSAPTPXPXXPGGGPIHLCKXKPPXPXPGXGXQXXRXC--GRXXGGRXXX 289
           G AS  A    +A  P P    G P       PP P P  G         G   GG+   
Sbjct: 41  GGASAAAYAAPAAGYPRPPIGYGAP------PPPPPPPAFGGLGGGAAYPGAGAGGQYDT 94

Query: 288 GVRGXPXGGXVSXWGXXG 235
           GV G   GG     G  G
Sbjct: 95  GVHGGAQGGYAGAQGAQG 112


>U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK180.5c protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
 Frame = -2

Query: 462 GXASXRAXXRKSAPTPXPXXPGGGPIHLCKXKPPXPXPGXGXQXXRXC--GRXXGGRXXX 289
           G AS  A    +A  P P    G P       PP P P  G         G   GG+   
Sbjct: 41  GGASAAAYAAPAAGYPRPPIGYGAP------PPPPPPPAFGGLGGGAAYPGAGAGGQYDT 94

Query: 288 GVRGXPXGGXVSXWGXXG 235
           GV G   GG     G  G
Sbjct: 95  GVHGGAQGGYAGAQGAQG 112


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 318 GRXXGGRXXXGVRGXPXGGXVSXWGXXGXPXSGGG 214
           GR  GGR   G RG P       WG  G    GGG
Sbjct: 135 GRGGGGRGGDG-RGPPGSNGGGDWGGNGGGGRGGG 168


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/76 (28%), Positives = 24/76 (31%)
 Frame = +1

Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MNRP 393
           PP     P  PP  +      PP P     P  PP       P      G   +  M  P
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGGMPPP 336

Query: 394 PPGXXRXGXGGALPLP 441
           PP   R   GG  P P
Sbjct: 337 PPPGMRY-PGGMPPPP 351


>U58758-7|AAO38576.1|  220|Caenorhabditis elegans Hypothetical
           protein ZK1127.9d protein.
          Length = 220

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = -1

Query: 406 GPRGGADSFMQXKTSXTXPGPWXTGXPXLRAEXRGXPXP-RGXGXAXRRXSFPMGXXG-G 233
           GP GGA SF     +    G      P      RG   P    G A R    P G  G  
Sbjct: 42  GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 101

Query: 232 PXVXGGXG 209
           P   GG G
Sbjct: 102 PPYRGGYG 109


>U58758-4|AAK68614.1|  914|Caenorhabditis elegans Hypothetical
           protein ZK1127.9a protein.
          Length = 914

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = -1

Query: 406 GPRGGADSFMQXKTSXTXPGPWXTGXPXLRAEXRGXPXP-RGXGXAXRRXSFPMGXXG-G 233
           GP GGA SF     +    G      P      RG   P    G A R    P G  G  
Sbjct: 51  GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 110

Query: 232 PXVXGGXG 209
           P   GG G
Sbjct: 111 PPYRGGYG 118


>U58758-3|AAK68615.1|  905|Caenorhabditis elegans Hypothetical
           protein ZK1127.9b protein.
          Length = 905

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/68 (32%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
 Frame = -1

Query: 406 GPRGGADSFMQXKTSXTXPGPWXTGXPXLRAEXRGXPXP-RGXGXAXRRXSFPMGXXG-G 233
           GP GGA SF     +    G      P      RG   P    G A R    P G  G  
Sbjct: 42  GPPGGAGSFFGVPPAARGRGGPGMAPPGFAGRGRGFATPGMSSGFAPRGRGMPPGRGGYM 101

Query: 232 PXVXGGXG 209
           P   GG G
Sbjct: 102 PPYRGGYG 109


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/76 (28%), Positives = 24/76 (31%)
 Frame = +1

Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MNRP 393
           PP     P  PP  +      PP P     P  PP       P      G   +  M  P
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG-PPGMPGMPPPPPPSRFGPPGMGGMPPP 346

Query: 394 PPGXXRXGXGGALPLP 441
           PP   R   GG  P P
Sbjct: 347 PPPGMRY-PGGMPPPP 361


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/70 (28%), Positives = 23/70 (32%)
 Frame = -2

Query: 423 PTPXPXXPGGGPIHLCKXKPPXPXPGXGXQXXRXCGRXXGGRXXXGVRGXPXGGXVSXWG 244
           P P P  P     +  + +P     G G      CG   GG    G  G   GG     G
Sbjct: 64  PQPCPAPPAA---YCPQVQPVYVQSGGGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGG 120

Query: 243 XXGXPXSGGG 214
             G    GGG
Sbjct: 121 GGGCGGGGGG 130


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRP 319
           PPP             PP   PRTP    PP  RP
Sbjct: 126 PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.145    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,162
Number of Sequences: 27780
Number of extensions: 237905
Number of successful extensions: 859
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)