Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H21
(958 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 2.0
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 30 2.6
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 29 3.5
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 29 4.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 4.6
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 29 6.0
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 29 6.0
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 6.0
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 6.0
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 8.0
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 28 8.0
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXA 327
PPP P PP PP P + P PP+ A
Sbjct: 491 PPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPA 528
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/62 (27%), Positives = 21/62 (33%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXAXXLXPXARXXXGRFXLA*MNRP 393
PPP P PP + PP P P PP + P + + RP
Sbjct: 482 PPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVY----CTRP 537
Query: 394 PP 399
PP
Sbjct: 538 PP 539
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP + PP P P PP
Sbjct: 467 PPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPP 501
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGX-PRTPXXXRPPXFRPQXRXXCXPXP 349
PPP P P T PP P P PP P C P P
Sbjct: 123 PPPTPYTPPPPTPYTPPPPTVKPPPPPVVTPPPPTPTPEAPCPPPP 168
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -2
Query: 468 RPGXASXRAXXRKSAPTPXPXXPGGGPIHLCKXKPPXPXPGXG 340
RP S + P+ P PGGGP PP P PG G
Sbjct: 653 RPPPRSAGGGKSTNLPSARPPLPGGGP------PPPPPPPGGG 689
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 453 SXRAXXRKSAPTPXPXXPGGGPIHLCKXKPPXPXPGXG 340
S R P P P PGGGP PP P P G
Sbjct: 669 SARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPG 706
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPPAXA 327
PPP P PP PP P P PP A
Sbjct: 267 PPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGA 304
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
PPP P PH + PP P PP P P P
Sbjct: 560 PPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPP 604
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 209 AXPPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXG 358
A PP G P P +T P P + P PQ PG G
Sbjct: 239 ARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAG 288
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 17/50 (34%)
Frame = +2
Query: 209 AXPPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXG 358
A PP G P P +T P P + P PQ PG G
Sbjct: 239 ARPPASAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAG 288
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 209 AXPPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXP 349
A PP D P P ++ PP P P P F P P P
Sbjct: 29 APPPTDSAPPPSPPADSSPPPALPSLP----PAVFSPPPTVSSPPPP 71
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 215 PPPDXGXPXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXP 343
PPP P P PP P P PP P R P
Sbjct: 573 PPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSP 615
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +2
Query: 236 PXXPHXETXPPXGXPRTPXXXRPPXFRPQXRXXCXPXPGXGXGGFXLHK*IGPPPGXXGX 415
P P PP G P P PP P G G L GPPP G
Sbjct: 174 PMGPGMSMPPPSGMPGGPLSNGPPPSGMHGGHLSNGPPPSGMPGGPLSN--GPPPPMMGP 231
Query: 416 G 418
G
Sbjct: 232 G 232
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 214 PPPXXXXPXXPPXGNXXSXXXPPXPXXXAXPXXPP 318
PPP P PP PP P P PP
Sbjct: 381 PPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPP 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.145 0.479
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,384
Number of Sequences: 28952
Number of extensions: 195548
Number of successful extensions: 1043
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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