Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H20
         (984 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    47   3e-05
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                47   3e-05
SB_44811| Best HMM Match : Toxin_33 (HMM E-Value=8.1)                  32   0.82 
SB_6524| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.6  

>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = +1

Query: 427 NXSXNPRGKXVXXLGAXPFPXXLTXCXRXFGCGNRF 534
           N S N RG+ V  LGA P P  LT C R FGCG R+
Sbjct: 102 NESANARGEAVCVLGALPLPRSLTRCARSFGCGERY 137


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = +1

Query: 427 NXSXNPRGKXVXXLGAXPFPXXLTXCXRXFGCGNRF 534
           N S N RG+ V  LGA P P  LT C R FGCG R+
Sbjct: 466 NESANARGEAVCVLGALPLPRSLTRCARSFGCGERY 501


>SB_44811| Best HMM Match : Toxin_33 (HMM E-Value=8.1)
          Length = 142

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +2

Query: 422 ALXNRPTPGERXXAXWA 472
           AL NRPTPGER  A WA
Sbjct: 46  ALMNRPTPGERRFAYWA 62


>SB_6524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +2

Query: 350 KXFNNNNXXHXXXQVQGXVWXVFXALXNRPTPGERXXAXWA 472
           K   + N      QV G    V  AL NRPT GER  A WA
Sbjct: 8   KGVQDTNGRFTGVQVVGKP-VVPAALMNRPTRGERRFAYWA 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,354,887
Number of Sequences: 59808
Number of extensions: 57952
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2919714245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)