Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H19
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    43   3e-04
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                43   3e-04
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 30   3.0  

>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +2

Query: 710 SCXNESAXPRGXAVCXXGALPFPRSXXXC 796
           SC NESA  RG AVC  GALP PRS   C
Sbjct: 99  SCINESANARGEAVCVLGALPLPRSLTRC 127


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = +2

Query: 710 SCXNESAXPRGXAVCXXGALPFPRSXXXC 796
           SC NESA  RG AVC  GALP PRS   C
Sbjct: 463 SCINESANARGEAVCVLGALPLPRSLTRC 491


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 399 LLKLYLK*HNISHCLF*EIFLICYNMTDPSNVKQFIGLY 283
           L++ Y+  +N+   L  E +L CYN+ DP  V+ ++  Y
Sbjct: 104 LVEGYIDCYNVDDPLLVEGYLYCYNVDDPLLVEGYVDCY 142



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 399 LLKLYLK*HNISHCLF*EIFLICYNMTDPSNVKQFIGLY 283
           L++ YL  +N+   L  E ++ CYN+ DP  V+ ++  Y
Sbjct: 119 LVEGYLYCYNVDDPLLVEGYVDCYNVDDPLLVEGYVDCY 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,946,154
Number of Sequences: 59808
Number of extensions: 287828
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)