Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H19
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    28   8.1  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    28   8.1  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +1

Query: 727 GXPPGXGGLXXGRPSVSSLXXPXPRSSXGGXXXSSRGSFQXYECSQRXL 873
           G PPG GG+    P       P      GG    S G     E  QR L
Sbjct: 190 GGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLPKSHGRSNMIEGVQRLL 238


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +1

Query: 727 GXPPGXGGLXXGRPSVSSLXXPXPRSSXGGXXXSSRGSFQXYECSQRXL 873
           G PPG GG+    P       P      GG    S G     E  QR L
Sbjct: 470 GGPPGHGGMGGPPPGQGGPGGPGGPGGPGGMLPKSHGRSNMIEGVQRLL 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,987
Number of Sequences: 27780
Number of extensions: 232912
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)