Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H19
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44180.1 68418.m05406 homeobox transcription factor, putative...    30   1.9  

>At5g44180.1 68418.m05406 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7/homeotic
            protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
            similar to GP|4165087| Williams-Beuren syndrome deletion
            transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
            domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 828  GXXPSPXGRPRXXXXERGNGRAPXXQTAXPRGXADS 721
            G  P   GRPR     RGNG+ P      PRG A+S
Sbjct: 1470 GRPPRGRGRPRA----RGNGKKPAVSVKPPRGAANS 1501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,879
Number of Sequences: 28952
Number of extensions: 205851
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)