Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H18
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    28   0.11 
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    24   1.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    24   1.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 347 ILFSFFTLFTIMLFHFFFYFVSKTCWLTF*RFFEFKFCHI 228
           I+F+   LF + ++HFF  F+  T  L F   F F   H+
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIFFNMHL 193



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 333 LYVVYDYALSLFFLFCI 283
           L  +Y + + LFFL CI
Sbjct: 130 LLCIYYFVVPLFFLLCI 146


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 368 LGFLRFRIL--FSFFTLFTIMLFHFFFYFVS 282
           LG ++F I   FSF + F  + F+ +F+++S
Sbjct: 62  LGIIQFPISAHFSFMSRFLCLPFYSYFFYLS 92


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 368 LGFLRFRIL--FSFFTLFTIMLFHFFFYFVS 282
           LG ++F I   FSF + F  + F+ +F+++S
Sbjct: 18  LGIIQFPISAHFSFMSRFLCLPFYSYFFYLS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,930
Number of Sequences: 336
Number of extensions: 2354
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)