Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H18
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    42   8e-05
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    30   0.36 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    30   0.48 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   7.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   7.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   7.8  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 246 LKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDIL 413
           LKK SKR+  RLR +IEKK  E  RKQ+             P    IPN  P+K+ IL
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKIL 61



 Score = 32.7 bits (71), Expect = 0.068
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 637 KQENSLQTYYXEFKKVISEAEVILEIVDAXGSLXTRCXXXKR 762
           K + S + Y  EFKKV+  ++VIL ++DA     TR    +R
Sbjct: 144 KADTSRKAYDKEFKKVVEASDVILYVLDARDPEGTRSKDVER 185


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 664 YXEFKKVISEAEVILEIVDAXGSLXTRCXXXKRXSR 771
           + E  KVI  ++V+++++DA   + TRC   +R  R
Sbjct: 207 WNELYKVIDSSDVLIQVLDARDPVGTRCGTVERYLR 242


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 571 KVHEAF-NGDSQPSQDIEFGKDXKQENSLQTYYXEFKKVISEAEVILEI 714
           K+ E   N D    QD +F K  + ++ L++Y    +  ISE  V++++
Sbjct: 517 KIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKL 565


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 383 RNLNWLGFLRFRILFS 336
           RNLNW  +L F ILFS
Sbjct: 449 RNLNWNVYLNFIILFS 464


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 373  IGLVFLDLGFFLASLRCLR 317
            +G+ F+DLG +  S +CLR
Sbjct: 1201 VGVSFIDLGSYTLSAKCLR 1219


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 362 FLRFRILFSFFT-LFTIMLFHFFF 294
           F  +  LFSFF+ LFT + F+FFF
Sbjct: 110 FFFYFSLFSFFSFLFTSLHFNFFF 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,229
Number of Sequences: 5004
Number of extensions: 35303
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)