Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H18
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)        30   2.1  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 234 AKFKLKKPSKRQPARLRYKIEKKVKEHNRKQR 329
           AK   KKP+  QPA  R K +K VK+   K R
Sbjct: 118 AKASTKKPTTAQPAAQRQKAQKNVKQMAAKPR 149


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 228 DMAKFKLKKPSKRQPARLRYKIEKKVKEHNRKQR 329
           ++AK K K+  KR+ A+ R K +++  +H RKQ+
Sbjct: 202 ELAKHKHKRKRKRESAKHRLKRKRESVKHKRKQK 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,598,619
Number of Sequences: 59808
Number of extensions: 236244
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)