Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H18
         (855 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080546-1|AAC29475.1|  432|Anopheles gambiae S-adenosyl-L-homoc...    25   2.9  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   3.9  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             24   6.8  

>AF080546-1|AAC29475.1|  432|Anopheles gambiae
           S-adenosyl-L-homocysteine hydrolase protein.
          Length = 432

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 219 IHSDMAKFKLKKPSKRQPARLRYKIEKKVK-EHNR 320
           +H D    KL K S RQP  L   +E   K EH R
Sbjct: 397 LHLDKLGVKLTKLSARQPEYLNLPVEGPYKPEHYR 431


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 353  FRILFSFFTLFTIMLFHFFFYFVSKTCWLTF 261
            F ++F    L   +   F  YF +  CWL F
Sbjct: 1346 FTVIFFLEMLIKWLALGFKVYFTNAWCWLDF 1376


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 214 YIYIQIWQNLNSKNLQN 264
           Y+Y+Q W+ +N K   N
Sbjct: 10  YVYVQTWEKVNIKGNPN 26


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,427
Number of Sequences: 2352
Number of extensions: 7850
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90959220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)