Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H18
(855 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical ... 31 0.79
AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical ... 31 0.79
AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical ... 31 0.79
AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical ... 31 0.79
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 29 3.2
U88170-8|AAB42244.1| 345|Caenorhabditis elegans Serpentine rece... 29 4.2
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 29 4.2
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 29 4.2
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 29 4.2
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 231 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRK-QRXXXXXXXXXXXXXPIQIPNICPFKED 407
MAK+ LKK SKR RYKIEKKV++HNRK ++ I +PN CPFKE+
Sbjct: 1 MAKYCLKKTSKRVSCAKRYKIEKKVRDHNRKVKKEAKKNGTTNKKEKTISVPNSCPFKEE 60
Query: 408 IL 413
IL
Sbjct: 61 IL 62
>AL021571-4|CAI79270.1| 610|Caenorhabditis elegans Hypothetical
protein T19A6.2c protein.
Length = 610
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 664 YXEFKKVISEAEVILEIVDAXGSLXTRCXXXKRXSRXRK 780
+ E KVI ++V++++VDA + TRC + R K
Sbjct: 222 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEK 260
>AL021571-2|CAA16514.2| 592|Caenorhabditis elegans Hypothetical
protein T19A6.2b protein.
Length = 592
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 664 YXEFKKVISEAEVILEIVDAXGSLXTRCXXXKRXSRXRK 780
+ E KVI ++V++++VDA + TRC + R K
Sbjct: 163 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEK 201
>AL021571-1|CAA16512.2| 651|Caenorhabditis elegans Hypothetical
protein T19A6.2a protein.
Length = 651
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 664 YXEFKKVISEAEVILEIVDAXGSLXTRCXXXKRXSRXRK 780
+ E KVI ++V++++VDA + TRC + R K
Sbjct: 222 WGELYKVIDSSDVVVQVVDARDPMGTRCRHVEEFLRKEK 260
>AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical
protein T11F8.2 protein.
Length = 424
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 401 FKWTYIRNLNWLGFLRFRILFSFFTLFTIMLFHFFFYFV 285
FKW+Y++ + + FL F L F+ + +F +FV
Sbjct: 261 FKWSYMKGTHTISFLSFMALLCFYNFQRSPMTTYFAFFV 299
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 180 TYGVTVKDCFLLYIHSDMAKFKLKKPSKRQPARLRYKIEKKVK 308
TYGV +++ L +S + K L KPSKR+ Y+IE K
Sbjct: 115 TYGVFIRNNTQLVDYSILDKIHLYKPSKRE--ECEYRIENNPK 155
>U88170-8|AAB42244.1| 345|Caenorhabditis elegans Serpentine
receptor, class h protein49 protein.
Length = 345
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 362 FLRFRILFSFFTLFTIMLFHFFFYFVSKTCWLTF*RFFEFKFCHI*MYI**KTIFYS 192
FL F FF L I LF F+ +++ F+F CH+ + TIFY+
Sbjct: 30 FLSFGAKSQFFVLVPINLFGFYCILFKTPKYMSE---FQFHLCHLQFWFTVLTIFYT 83
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 598 SQPSQDIEFGKDXKQENSLQTYYXEFKKVISEAEVILEIVDAXGSL 735
S P Q +EF D + L Y + KV E +++LEI D+ L
Sbjct: 514 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDSPPKL 559
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 598 SQPSQDIEFGKDXKQENSLQTYYXEFKKVISEAEVILEIVDAXGSL 735
S P Q +EF D + L Y + KV E +++LEI D+ L
Sbjct: 514 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDSPPKL 559
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 598 SQPSQDIEFGKDXKQENSLQTYYXEFKKVISEAEVILEIVDAXGSL 735
S P Q +EF D + L Y + KV E +++LEI D+ L
Sbjct: 553 SNPHQGLEFLVDKDDLDDLVMYIVGYHKVTYEKDLLLEIDDSPPKL 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,976
Number of Sequences: 27780
Number of extensions: 196882
Number of successful extensions: 506
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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