Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H18
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    40   0.002
At3g07130.1 68416.m00849 serine/threonine protein phosphatase fa...    30   1.7  
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa...    28   6.9  

>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +1

Query: 640 QENSLQTYYXEFKKVISEAEVILEIVDAXGSLXTRCXXXKR 762
           ++NS + +Y E  KVI  ++VILE++DA   L TRC   +R
Sbjct: 119 RDNSERAFYKELVKVIELSDVILEVLDARDPLGTRCTDMER 159



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 231 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ---IPNICPFK 401
           M K   K  SKR   + ++K+ KKVKEH++K+                +   IPN  PFK
Sbjct: 1   MVKRSKKSKSKRVTLKQKHKVLKKVKEHHKKKAKDAKKLGLHRKPRVEKDPGIPNDWPFK 60

Query: 402 EDIL 413
           E  L
Sbjct: 61  EQEL 64


>At3g07130.1 68416.m00849 serine/threonine protein phosphatase
           family protein contains similarity to purple acid
           phosphatase [Arabidopsis thaliana]
           gi|20257489|gb|AAM15914
          Length = 532

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 524 WHQPEHIGYXMHKLEEKCMKPSME 595
           WH P +  Y  H  E +CMK +ME
Sbjct: 358 WHPPWYSSYTAHYREAECMKEAME 381


>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 576

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 664 YXEFKKVISEAEVILEIVDAXGSLXTRC 747
           + E  KVI  ++VI++++DA     TRC
Sbjct: 206 WGELYKVIDSSDVIVQVIDARDPQGTRC 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,500
Number of Sequences: 28952
Number of extensions: 168622
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)