Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H16
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.49 
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   4.5  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 340 RVEVTNNYGFINLMGGNGFVNINKRWKGDSVQLLG-TNCRLIVAGKLMSV 486
           R+E+ N   F+     N  + ++      SVQ+ G +NC +I+ GKL +V
Sbjct: 397 RIELENTKWFVENQVDNHSIVLDSVELNHSVQIFGCSNCTIIIKGKLNTV 446


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 372 DETVVIRHLHPTIVANHLDVAVISTNINHAVVSDYFEKTRVRLHC 238
           DET  +  L   ++ NH D+  +ST    A++S Y ++TRV   C
Sbjct: 88  DETEDLYRLIKRVLTNHPDLEAVSTG---AILSTY-QRTRVENVC 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,834
Number of Sequences: 5004
Number of extensions: 64294
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)