Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H16
(862 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034) 32 0.69
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25) 31 1.6
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 31 1.6
SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_14807| Best HMM Match : RVT_1 (HMM E-Value=2.2) 29 3.7
SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6) 29 4.9
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27) 29 4.9
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063) 29 4.9
SB_37247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 28 8.5
>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 3404
Score = 31.9 bits (69), Expect = 0.69
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 238 TMETNSCLLKV--VGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGFINLMGGNGFV 399
T+ N CL+K VGN ++ V +N +E V + +TNN G +GF+
Sbjct: 1606 TLNPNDCLVKSNDVGNRTLVCV-SNLEFVEGVKYTTTIRITNNVGLTATKSSDGFI 1660
>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
Length = 467
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V KV E V + L IV+N+LDV++ S+
Sbjct: 8 PSLKKHNANDLLHPNFRPVSNLPMVSKVIEKAVAKQLTKHIVSNNLDVSLKSS 60
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V KV E V L IV+N+LDV++ S+
Sbjct: 597 PSLKKHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSS 649
>SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V KV E V L IV+N+LDV++ S+
Sbjct: 12 PSLKKHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSS 64
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 208 NNIVGNNTKVTMETN-SCLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGFINLMG 384
NNI+ NN + + N + ++ NN +I + N +I ++ NN + + NN N++
Sbjct: 396 NNIIINNNNIIINNNINNNNIIINNNNIIIINNNIININIIINNNNI-IINNIIIKNIII 454
Query: 385 GNGFVNI 405
N + I
Sbjct: 455 NNNNIII 461
>SB_14807| Best HMM Match : RVT_1 (HMM E-Value=2.2)
Length = 281
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVA 310
P+++ N + P F V KV E V L IV+N+LDV+
Sbjct: 84 PSLKKHNANHLLYPNFRPVSNLPMVSKVIEKAVAEQLTKHIVSNNLDVS 132
>SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6)
Length = 367
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V KV + V L IV+N+LDV++ S+
Sbjct: 163 PSLKKHNANHLLYPNFRPVSNLPMVSKVIKKAVAEQLTKHIVSNNLDVSLQSS 215
>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V KV + V L IV+N+LDV++ S+
Sbjct: 2264 PSLKKHNANHLLYPNFRPVSNLPMVSKVIKKAVAEQLTKHIVSNNLDVSLQSS 2316
>SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)
Length = 286
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F KV E V L IV+N+LDV++ S+
Sbjct: 12 PSLKKHNANHLLYPNFRPASNLPMVSKVIEKAVAEQLTKHIVSNNLDVSLQSS 64
>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
Length = 773
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/69 (14%), Positives = 34/69 (49%)
Frame = +1
Query: 214 IVGNNTKVTMETNSCLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGFINLMGGNG 393
I+G + + ++ +L ++G I ++ Y ++ ++G +++ Y + ++G
Sbjct: 487 IIGKTSGIDLKATYKVLLIIGETSSIDLKATYKELLIIGETSGIDLKATYKELLIIGKTS 546
Query: 394 FVNINKRWK 420
+++ +K
Sbjct: 547 GIDLKATYK 555
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/69 (14%), Positives = 33/69 (47%)
Frame = +1
Query: 214 IVGNNTKVTMETNSCLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGFINLMGGNG 393
I+G + + ++ L ++G I ++ Y ++ ++G +++ Y + ++G
Sbjct: 505 IIGETSSIDLKATYKELLIIGETSGIDLKATYKELLIIGKTSGIDLKATYKVLLIIGKTS 564
Query: 394 FVNINKRWK 420
+++ +K
Sbjct: 565 GIDLKATYK 573
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/69 (14%), Positives = 34/69 (49%)
Frame = +1
Query: 214 IVGNNTKVTMETNSCLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEVTNNYGFINLMGGNG 393
I+G + + ++ +L ++G I ++ Y ++ ++G +++ Y + ++G
Sbjct: 541 IIGKTSGIDLKATYKVLLIIGKTSGIDLKATYKELLIIGKTSGIDLKATYKELLIIGKTS 600
Query: 394 FVNINKRWK 420
+++ +K
Sbjct: 601 GIDLKATYK 609
>SB_37247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 456 PTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVIST 298
P+++ N + P F V +V E V L IV+N+LDV++ S+
Sbjct: 12 PSLKKHNANHLLYPNFRPVSNLPMFSRVIEKAVAEQLTKHIVSNNLDVSLQSS 64
>SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 498 GPTVAIQHGPGRRY*TDFPIRDAVNSDDSNGFRFCVLNSERY 623
G V+++ PG P + +DD GFR C+ S Y
Sbjct: 567 GTFVSLKAAPGTSERDCLPCPEGTKNDDFAGFRACICQSNYY 608
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 498 GPTVAIQHGPGRRY*TDFPIRDAVNSDDSNGFRFCVLNSERY 623
G V+++ PG P + +DD GFR C+ S Y
Sbjct: 70 GTFVSLKAAPGTSERDCLPCPEGTKNDDFAGFRACICQSNYY 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,699,360
Number of Sequences: 59808
Number of extensions: 497454
Number of successful extensions: 1232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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