Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H16
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    33   0.35 
AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical ...    32   0.60 
Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    28   9.8  
U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = -2

Query: 447  RPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTIVANHLDVAVISTNINHAVVSDY 268
            R  +L  + + T + +  A +T  +D+  ++RH   T + +     +   N+N  ++ D 
Sbjct: 1232 RASDLVLLNMQTRISIGAAFNTRHLDQKRLLRHRRNTEIFDSYQGEISGVNVNGLMILDL 1291

Query: 267  FEKTRVRLH 241
            +E    R+H
Sbjct: 1292 YENGSNRIH 1300


>AF003385-1|AAB54243.1|  884|Caenorhabditis elegans Hypothetical
           protein R08F11.1 protein.
          Length = 884

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 366 TVVIRHLHPTIVANHLDVAVISTNINHAVVSDYFEKTRVRLHCHFSIVTNN 214
           TVV+ HL P I  ++ D ++   N    V +D +E+  V +   F   T N
Sbjct: 211 TVVVEHLSPVIPGDYSDSSLPLANFEFHVFNDSYEEVEVSITMSFRNGTGN 261


>Z49207-6|CAJ58500.1|  348|Caenorhabditis elegans Hypothetical
           protein R07E3.1b protein.
          Length = 348

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 372 DETVVIRHLHPTIVANHLDVAVISTNINHAVVSDYFEKTRVR 247
           DE    R++H   +AN +D+  ++   N   V+D++  TR++
Sbjct: 198 DEDKAFRYIHRNGLANAVDLPYVAHRQNGCAVNDHWNTTRIK 239


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
           protein R07E3.1a protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 372 DETVVIRHLHPTIVANHLDVAVISTNINHAVVSDYFEKTRVR 247
           DE    R++H   +AN +D+  ++   N   V+D++  TR++
Sbjct: 252 DEDKAFRYIHRNGLANAVDLPYVAHRQNGCAVNDHWNTTRIK 293


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 247 TNSCLLKVVGNNCVIYVRTNYGDIEVVGNNCRVEV---TNNY 363
           T SCL +  G NC    R NY D   V  +C+  V   T NY
Sbjct: 421 TCSCLSQYFGTNCEEINRCNYAD-PCVNGDCQTTVDGITTNY 461


>U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical
           protein C55C3.1 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 597 FCVLNSERYVAPSMTFDVVSVLKVATRGHDVDGSV*IKALFFKKK 731
           F V  ++R     +  DVV+  +++ +GH+V GSV ++    K++
Sbjct: 437 FAVNGNQRRQVIVVDLDVVADARLSIQGHNVSGSVELRKFDLKRR 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,611
Number of Sequences: 27780
Number of extensions: 370653
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)