Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H16
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16020.1 68418.m01873 stress protein-related contains weak si...    29   4.0  
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains...    28   7.0  
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99...    28   9.2  
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99...    28   9.2  
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99...    28   9.2  
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99...    28   9.2  

>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 560 TNGKIGSITSSRSVLDGDSWA---S*DGTDISFPATISLQFVPRS 435
           T G +   ++S  V+D +SWA   S DGT  SF  T  L  +P++
Sbjct: 263 TIGPLAETSASDPVIDSNSWASIGSLDGTLYSFSRTGDLYKIPKN 307


>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
           weak hit to Pfam profile PF00023: Ankyrin repeat
          Length = 497

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = -2

Query: 678 LESQP*AQKPHQKSLKVPRIFHCLTHKS-EIHLSRRYSPHHEWENRFNNVVQVRAGWRQL 502
           L   P +Q+ H   +K  R +  +  KS +++ S    P  + ++   +V Q +   R +
Sbjct: 219 LAPPPRSQRRHSSFVKEDRDWISVGRKSVDVYPSAAPPPPRQSQSPRRSVSQFQPPRRSM 278

Query: 501 GLVGRD*HQLPRNDQPTIRPEELNAVALPTFVDVHKAVSTHKVDETVVIRHLHPTI 334
             V     Q PR      +P    +VALP+ V       + ++ E   ++ LHP++
Sbjct: 279 AQV-----QPPRRSVAQAQPPR-RSVALPSTVSPVNPPPSPQIKEKEFVKSLHPSV 328


>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 490 TGLTSASPQRSAYNSSRGAERCRPSNVC*CSQSRFHP*G**NRSYSSPPPDNCCQPP 320
           TG +  + ++S++ S+  A    PS+    SQ  +   G    SY+ PPP +  QPP
Sbjct: 3   TGNSKENWRQSSFRST-SASSASPSSSSWASQQSYPQYG--AESYNYPPPPSYAQPP 56


>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 490 TGLTSASPQRSAYNSSRGAERCRPSNVC*CSQSRFHP*G**NRSYSSPPPDNCCQPP 320
           TG +  + ++S++ S+  A    PS+    SQ  +   G    SY+ PPP +  QPP
Sbjct: 3   TGNSKENWRQSSFRST-SASSASPSSSSWASQQSYPQYG--AESYNYPPPPSYAQPP 56


>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 490 TGLTSASPQRSAYNSSRGAERCRPSNVC*CSQSRFHP*G**NRSYSSPPPDNCCQPP 320
           TG +  + ++S++ S+  A    PS+    SQ  +   G    SY+ PPP +  QPP
Sbjct: 3   TGNSKENWRQSSFRST-SASSASPSSSSWASQQSYPQYG--AESYNYPPPPSYAQPP 56


>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 468

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -1

Query: 490 TGLTSASPQRSAYNSSRGAERCRPSNVC*CSQSRFHP*G**NRSYSSPPPDNCCQPP 320
           TG +  + ++S++ S+  A    PS+    SQ  +   G    SY+ PPP +  QPP
Sbjct: 3   TGNSKENWRQSSFRST-SASSASPSSSSWASQQSYPQYG--AESYNYPPPPSYAQPP 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,518
Number of Sequences: 28952
Number of extensions: 347495
Number of successful extensions: 952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)