Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H13
(987 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.047
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.082
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.015
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +3
Query: 495 PGGGGGFXXFXXXXXXPXXPXGGXXXGXXXPPAGPXGXXXGXXGVGGGXGGXPPXP 662
PGG GGF F GG G GP G G G GGG GG P
Sbjct: 204 PGGFGGFGGFGGEGHHHGG-HGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258
Score = 33.1 bits (72), Expect = 0.062
Identities = 27/82 (32%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Frame = +1
Query: 412 GGGXXXFWVXGGGGGXXXPXXXXXXXSGPGGGGXX-GXFXXFXXXPXXXGGGXXGGPGXP 588
GGG F GG GG G GG G G F P GG G G
Sbjct: 187 GGGFGGF--GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF-GGG 243
Query: 589 PPXXGAGXGXXGXXGGGXXXSP 654
P G G G G GG P
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGP 265
Score = 31.9 bits (69), Expect = 0.14
Identities = 28/81 (34%), Positives = 28/81 (34%)
Frame = +1
Query: 397 GGXXXGGGXXXFWVXGGGGGXXXPXXXXXXXSGPGGGGXXGXFXXFXXXPXXXGGGXXGG 576
GG G G F GG GG G G GG G F P GGG G
Sbjct: 198 GGPPPGPGG--FGGFGGFGGEGHHHGGHGGFGG-GPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 577 PGXPPPXXGAGXGXXGXXGGG 639
G P G G G G G G
Sbjct: 255 GGGP---GGFGGGPGGHGGPG 272
Score = 31.1 bits (67), Expect = 0.25
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Frame = +1
Query: 559 GGXXGGPGXPPPXXGAGXGXXGXXG--------GGXXXSPPXXXXXPXXGXXXPXGGGGW 714
GG GG G PPP G G G G GG P P P G GG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 715 XXXXGXXXXG 744
G G
Sbjct: 251 LGGFGGGPGG 260
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/57 (33%), Positives = 19/57 (33%)
Frame = +3
Query: 492 RPGGGGGFXXFXXXXXXPXXPXGGXXXGXXXPPAGPXGXXXGXXGVGGGXGGXPPXP 662
R GGGF F P P G G G G G GGG GG P
Sbjct: 183 RGHNGGGFGGFGGGSGGP--PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.015
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -2
Query: 563 PPPXXXGXXXXXXKXPKXPPPPGPXXXXXXXXGXXXPPPPPXTQKXXXPPPXXXPP 396
PPP P PPP P G PPPPP PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMG-----GPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 33.9 bits (74), Expect = 0.035
Identities = 19/71 (26%), Positives = 20/71 (28%)
Frame = -2
Query: 710 PPPPXGXXXPXXGXXXXXGGXXXXPPPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXX 531
PPPP P P P P G G P PP PP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Query: 530 XXKXPKXPPPP 498
P+ P P
Sbjct: 793 YAPAPQAEPEP 803
Score = 30.7 bits (66), Expect(2) = 0.047
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 515 KXPPPPGPXXXXXXXXGXXXPPPPPXTQKXXXPPPXXXP 399
K PPPP P P PPP PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 30.3 bits (65), Expect = 0.44
Identities = 24/66 (36%), Positives = 24/66 (36%)
Frame = -2
Query: 638 PPPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPKXPPPPGPXXXXXXXXGXX 459
PPP P PAP P PP P P G P PPPPG
Sbjct: 734 PPPPAVIVPTPAPAP---IPVPP--PAPIMGGP-------PPPPPPPG------VAGAGP 775
Query: 458 XPPPPP 441
PPPPP
Sbjct: 776 PPPPPP 781
Score = 21.4 bits (43), Expect(2) = 0.047
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = -2
Query: 308 PXRPXSXPXXPPEGXFPPPXXPP 240
P P P G PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.047
Identities = 27/105 (25%), Positives = 27/105 (25%), Gaps = 2/105 (1%)
Frame = -1
Query: 720 PPPXXXPXXXXXAXXRXPPXGRGGXXPXPPXXPXXPXSXPXXRRG--AXXXPXXXPPXXP 547
PPP P PP GR P PP P A P PP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 546 GXXRKXXKXPXXPPPPRAGXXXXXXXGXXXPPPPPXDPKXXXPAP 412
G P PP A PP P AP
Sbjct: 397 G-----RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
Score = 33.1 bits (72), Expect = 0.062
Identities = 36/142 (25%), Positives = 39/142 (27%), Gaps = 10/142 (7%)
Frame = -2
Query: 635 PPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPKXPPPP-GPXXXXXXXXGXX 459
PP P P P PP PPP P PP P P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPP----SNGTVSSPPNSPPRPIAPVSMNPAINSTS 288
Query: 458 XPP-PPPXTQ--------KXXXPPPXXXPPXXXXXXXXXXXXXXPSXNXRAXXXXQVTLP 306
PP PPP ++ PPP PP S N
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPP---PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRS 345
Query: 305 XRPXSXPXXPPEGXFPPPXXPP 240
S P PP+G PP PP
Sbjct: 346 NAAGSIP-LPPQGRSAPPPPPP 366
Score = 32.3 bits (70), Expect = 0.11
Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Frame = -2
Query: 638 PPPXXPXXPXPAPXXGGGXPGPPXXPP----PXXXGXXXXXXKXPKXPPPPGPXXXXXXX 471
P P P P G PP PP P P PPP
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305
Query: 470 XGXXXPPPP-PXTQKXXXPPP 411
PPPP P +++ PP
Sbjct: 306 ANKKRPPPPPPPSRRNRGKPP 326
Score = 31.5 bits (68), Expect = 0.19
Identities = 31/138 (22%), Positives = 35/138 (25%), Gaps = 5/138 (3%)
Frame = -2
Query: 638 PPPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPK---XPPPPGPXXXXXXXX 468
PPP P G P PPP P+ PPPP P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP----RSAP 370
Query: 467 GXXXPPPPPXTQKXXXPPPXXXPPXXXXXXXXXXXXXXPSXNXRAXXXXQVTLPXR--PX 294
PPP + + PP P S +LP P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430
Query: 293 SXPXXPPEGXFPPPXXPP 240
P PP P PP
Sbjct: 431 LPPSAPPSLPMGAPAAPP 448
Score = 30.7 bits (66), Expect = 0.33
Identities = 36/174 (20%), Positives = 38/174 (21%), Gaps = 12/174 (6%)
Frame = -2
Query: 725 KXXXXPPPPX--GXXXPXXGXXXXXGGXXXXPPPXXPXXPXPAPXXGGGXPGPPXXPP-- 558
K PPPP P G PPP P G PP PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 557 -------PXXXGXXXXXXKXPKXPPP-PGPXXXXXXXXGXXXPPPPPXTQKXXXPPPXXX 402
P P PP PG G P PP
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 401 PPXXXXXXXXXXXXXXPSXNXRAXXXXQVTLPXRPXSXPXXPPEGXFPPPXXPP 240
P + LP + P PP PPP P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 30.3 bits (65), Expect = 0.44
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Frame = -3
Query: 670 PXXGXGGXPPXPPPTPXXPXXXPXGPA-GGXXXPXXXPPXGXXGXXXXXQKXXXPPPPP 497
P G PP PP P P PA P PP PPPPP
Sbjct: 259 PSNGTVSSPPNSPPRPIAP--VSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPP 315
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.082
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = -2
Query: 653 GXXXXPPPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPKXPPPPGPXXXXXX 474
G P P P P P P P PP P PP P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP-----A 1173
Query: 473 XXGXXXPPPPPXTQKXXXPPPXXXPP 396
P P P PPP PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Frame = -2
Query: 638 PPPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPKX--PPPPGPXXXXXXXXG 465
P P P PAP P P PP P PP P P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Query: 464 XXXPPPPPXTQKXXXPPP 411
PP P P P
Sbjct: 1165 SVAAPPVPAPSSGIPPVP 1182
Score = 29.5 bits (63), Expect = 0.76
Identities = 28/115 (24%), Positives = 31/115 (26%), Gaps = 7/115 (6%)
Frame = -1
Query: 720 PPPXXXPXXXXXAXXRXPPXGRGGXXPXP------PXXPXXPXSXPXXRRGAXXXPXXXP 559
P P P + P G P P P P P + A P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 558 P-XXPGXXRKXXKXPXXPPPPRAGXXXXXXXGXXXPPPPPXDPKXXXPAPXXXXP 397
P P + P PPP A G P P P PAP P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG-LPPVPVPTAKAPPVPAPSSEAP 1247
Score = 27.9 bits (59), Expect = 2.3
Identities = 28/129 (21%), Positives = 31/129 (24%), Gaps = 3/129 (2%)
Frame = -1
Query: 720 PPPXXXPXXXXXAXXRXPPXGRGGXXPXPPXXPXXPXSXPXXRRGAXXXPXXXPPXXPGX 541
P P P P G PP P P + P P P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094
Query: 540 XRKXXKXPXXPPPPRAGXXXXXXXG-XXXPPPPPXDPKXXXP--APXXXXPXXXXXXXXX 370
+ P P P A G P P P P AP P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154
Query: 369 XPGAPTLXK 343
GAP + K
Sbjct: 1155 PSGAPPVPK 1163
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -2
Query: 575 PPXXPPPXXXGXXXXXXKXPKXPPPPG 495
PP PPP P PPPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = -2
Query: 518 PKXPPPPGPXXXXXXXXGXXXPPPPPXTQKXXXPPP 411
P PPPP P PPPP +K P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 635 PPXXPXXPXPAPXXGGGXPGPPXXPPP 555
PP P P P P G P P PPP
Sbjct: 5 PPGNPPPPPPPP--GFEPPSQPPPPPP 29
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 455 PPPPPXTQKXXXPPPXXXP 399
PPPPP + PPP P
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -2
Query: 467 GXXXPPPPPXTQKXXXPPPXXXPP 396
G PPPPP + PP PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = -2
Query: 635 PPXXPXXPXPAPXXGGGXPGPPXXPPPXXXGXXXXXXKXPKXPPPPGP 492
PP P P P PP PP P PPPP P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG-PPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = -2
Query: 749 APPXXXXPKXXXXPPPPXGXXXPXXGXXXXXGGXXXXPPPXXPXXPXPA 603
APP P PPPP P G PPP P P+
Sbjct: 1698 APPQMSAPT----PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Score = 25.8 bits (54), Expect = 9.4
Identities = 19/70 (27%), Positives = 19/70 (27%)
Frame = -2
Query: 605 APXXGGGXPGPPXXPPPXXXGXXXXXXKXPKXPPPPGPXXXXXXXXGXXXPPPPPXTQKX 426
A GG P P PP PPPP PPPP
Sbjct: 1675 AKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPP----------MSVPPPPSAPPMP 1724
Query: 425 XXPPPXXXPP 396
PP PP
Sbjct: 1725 AGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 638 PPPXXPXXPXPAPXXGGGXPGPPXXPPP 555
PPP P AP G P P P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/69 (24%), Positives = 17/69 (24%)
Frame = -3
Query: 703 PPXXRXXXXEAPXXGXGGXPPXPPPTPXXPXXXPXGPAGGXXXPXXXPPXGXXGXXXXXQ 524
PP P PP P P P P P P PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLP--PPAQPAAPVKSPPSAPSLPSAVPP 196
Query: 523 KXXXPPPPP 497
PPPP
Sbjct: 197 MPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.157 0.562
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,068
Number of Sequences: 5004
Number of extensions: 25804
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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