Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...   136   6e-33
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   4.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   5.4  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score =  136 bits (328), Expect = 6e-33
 Identities = 65/136 (47%), Positives = 94/136 (69%), Gaps = 2/136 (1%)
 Frame = +3

Query: 297 SQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYM 476
           +Q  W  P    +R  L +YN+L+  K  F+ +NG+ + WY CGPTVYDASHMGHAR+Y+
Sbjct: 7   AQSHWGVP--KGQRTELYVYNTLTHSKVPFV-SNGSNLTWYCCGPTVYDASHMGHARNYV 63

Query: 477 SFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNV 656
           + DILRR++ +YFGY+I +V N+TDIDDKII RARQ+YL+E+Y K+ +  N +  +A   
Sbjct: 64  TTDILRRILQSYFGYNITFVQNVTDIDDKIILRARQQYLFEEY-KKQQGTNKSHSEAREK 122

Query: 657 IN--YYEEAVKNAEDP 698
           +   ++  A KN  +P
Sbjct: 123 VTEAWFAYAKKNLPEP 138


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
 Frame = +3

Query: 552  IDDKIIKRARQKYLYEKYL-------KEPRNLND--TIDDAVNVINYYEEAVKNAEDPDK 704
            I++ +++RAR+K + E  +       K+  + ND  + ++   ++ +    +  AE+  K
Sbjct: 820  IEEDVLERARRKMILEYAIISLGVTDKQKNSKNDKFSAEELSAILKFGASNMFKAENNQK 879

Query: 705  KIDAENMDEI 734
            K++  N+DEI
Sbjct: 880  KLEDMNLDEI 889


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 369 RQKEEFIPANGNRVNWYSCGPTVYDAS-HMGHARSYMSF 482
           R++E+F+ +N     WY C     D   ++ H   YM+F
Sbjct: 232 REEEKFLTSNDLPPLWYHCKSLFDDRMVYVNHVYGYMTF 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,121
Number of Sequences: 5004
Number of extensions: 62022
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)