Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0304 - 2378657-2378704,2378790-2378795,2378860-2379039,237...    97   1e-20
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147...    89   7e-18
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502...    85   8e-17
09_04_0150 - 15150169-15150228,15150294-15150529,15151844-151520...    28   10.0 
01_06_0909 - 32903520-32903828,32903899-32903973,32904068-329042...    28   10.0 

>03_01_0304 -
           2378657-2378704,2378790-2378795,2378860-2379039,
           2379145-2379327,2379549-2379632,2379748-2379873,
           2379964-2380245,2380326-2380496,2380828-2380989,
           2381501-2381564,2382040-2382221
          Length = 495

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 44/85 (51%), Positives = 61/85 (71%)
 Frame = +3

Query: 330 KERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMAN 509
           K  P L+L+NS++++KE F P    +V  Y CG T YD SH+GHAR+Y++FD+L R +  
Sbjct: 6   KPTPQLELFNSMTKKKELFEPLVEGKVRMYVCGVTPYDFSHIGHARAYVAFDVLYRYL-K 64

Query: 510 YFGYDILYVMNITDIDDKIIKRARQ 584
           + GY++ YV N TDIDDKIIKRA +
Sbjct: 65  FLGYEVEYVRNFTDIDDKIIKRANE 89


>09_06_0243 -
           21813223-21813456,21814266-21814367,21814501-21814701,
           21815591-21815716,21815791-21816072,21816218-21816388,
           21816838-21816999,21817404-21817467,21818136-21818503
          Length = 569

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
 Frame = +3

Query: 345 LKLYNSLSRQKEEFIP-ANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGY 521
           L LYN+ SR+KE F P   G  V  Y CG T YD SH+GHAR+Y++FD+L R +  Y  +
Sbjct: 72  LHLYNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARAYVAFDVLYRYL-RYLDH 130

Query: 522 DILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNV 656
            + YV N TDIDDKII RA Q    + +    R  +D + D  N+
Sbjct: 131 KVRYVRNFTDIDDKIIARANQ-LGEDPFSLSKRYSDDFLSDMANL 174


>10_08_0290 +
           16549048-16549262,16549770-16549833,16550106-16550267,
           16550786-16550956,16551041-16551235,16551421-16551546,
           16551648-16551809,16551953-16552120,16552223-16552435
          Length = 491

 Score = 85.0 bits (201), Expect = 8e-17
 Identities = 39/80 (48%), Positives = 55/80 (68%)
 Frame = +3

Query: 345 LKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYD 524
           L+L+++ ++    F P    +V  Y CG T YD SH+GHAR+Y++FD+L R +  Y GY+
Sbjct: 22  LRLFDTRTKAAVPFRPRVEGKVAMYVCGVTPYDYSHVGHARAYVAFDVLFRYL-KYLGYE 80

Query: 525 ILYVMNITDIDDKIIKRARQ 584
           + YV N TDIDDKIIKRA +
Sbjct: 81  VNYVRNFTDIDDKIIKRANE 100


>09_04_0150 -
           15150169-15150228,15150294-15150529,15151844-15152063,
           15152218-15152385,15152969-15153214
          Length = 309

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 393 RV*ILLFVGSNYCKVLKLVAPCFEPEVTKQV 301
           R+  LL    NYCK    + P F P+VT+ +
Sbjct: 179 RIGNLLVPNDNYCKFENWIMPIFLPDVTRAI 209


>01_06_0909 -
           32903520-32903828,32903899-32903973,32904068-32904235,
           32904508-32904565,32904638-32904879,32905145-32905216,
           32905865-32905943,32906734-32907062,32907137-32907256,
           32907355-32907429,32908260-32908342,32908942-32908984,
           32909271-32909429,32910203-32910281,32910685-32910755,
           32910847-32910946,32911023-32911229,32911348-32911442,
           32912362-32912436,32912621-32912713,32913078-32913182,
           32913851-32913921,32914943-32915096,32916035-32916098,
           32916717-32916800,32917543-32917589,32918352-32918411,
           32918521-32918592
          Length = 1062

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 378 EEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDID 557
           EEF+P  G  V  Y+ GP         HA +  S  +   VM N  G ++ Y + +T  +
Sbjct: 208 EEFMPTGGTDVKVYTVGP------GYAHAEARKSPVVDGVVMRNSDGKEVRYPVLLTPTE 261

Query: 558 DKIIKRARQKY 590
            +I +   Q +
Sbjct: 262 KQIARNICQAF 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,831
Number of Sequences: 37544
Number of extensions: 349869
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2881826040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)