Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)               168   7e-42
SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.82 
SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_44122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.7  

>SB_19343| Best HMM Match : tRNA-synt_1e (HMM E-Value=0)
          Length = 583

 Score =  168 bits (408), Expect = 7e-42
 Identities = 77/141 (54%), Positives = 103/141 (73%)
 Frame = +3

Query: 285 MSKRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHA 464
           MS ++ P+W+ P  + E   LKLYNSL+R+K  FIP+NG RV WYSCGPTVYDASHMGHA
Sbjct: 1   MSAKNLPSWNQPQGHGE---LKLYNSLTREKNLFIPSNGRRVTWYSCGPTVYDASHMGHA 57

Query: 465 RSYMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDD 644
           RSY++FDI+RRV+ +YF YD+  VMN+TDIDDKII RAR+ +L EKY +E  +    + D
Sbjct: 58  RSYITFDIVRRVLQSYFNYDVFCVMNVTDIDDKIIHRARRNHLQEKYREENSDPKKILSD 117

Query: 645 AVNVINYYEEAVKNAEDPDKK 707
               +  Y + +++ +D DKK
Sbjct: 118 IQVALQPYVKKMEDTKDEDKK 138


>SB_5412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +3

Query: 522 DILYVMNITDI-DDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDP 698
           D+    NI D+ DD +      +  Y+  + +  NL D  DD+V+  N  E+   ++ D 
Sbjct: 76  DVYDDSNIEDVYDDSVDDDNNIEDYYDDSVDDDSNLEDVYDDSVDDDNNIEDVYDDSVDD 135

Query: 699 DKKIDAENMDEI 734
           D  I+    D +
Sbjct: 136 DNNIEVVYDDSV 147



 Score = 29.5 bits (63), Expect = 4.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 540 NITDI-DDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDPDKKID 713
           NI D  DD +   +  + +Y+  + +  N+ D  DD+V+  N  E    ++ D D  I+
Sbjct: 96  NIEDYYDDSVDDDSNLEDVYDDSVDDDNNIEDVYDDSVDDDNNIEVVYDDSVDDDNNIE 154


>SB_44597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 540 NITDI-DDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDPDKKIDA 716
           NI D  DD +   +  + +Y+  + +  N+ D  DD+V+  N  E+   ++ D D  I+ 
Sbjct: 96  NIEDYYDDSVDDDSNIEDVYDDSVDDDNNIEDVYDDSVDDDNNIEDVYDDSVDDDNNIEV 155

Query: 717 ENMDEI 734
              D +
Sbjct: 156 VCDDSV 161



 Score = 29.5 bits (63), Expect = 4.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 540 NITDI-DDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDPDKKID 713
           NI D+ DD +      + +Y+  + +  N+ D  DD+V+  N  E    ++ D D  I+
Sbjct: 110 NIEDVYDDSVDDDNNIEDVYDDSVDDDNNIEDVYDDSVDDDNNIEVVCDDSVDDDNNIE 168


>SB_44122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 103 FLFYAHLVQCDEIKR-RLYLRGENNLKI 183
           F+ YA L  CD   R RLY+RG  NL +
Sbjct: 317 FVKYARLADCDMKPRARLYIRGRTNLSL 344


>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 534 VMNITDIDDKIIKRARQKYLYE---KYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDPDK 704
           +    D +    K  R KYL +   K L    N    +  A   +   E   K+A  PDK
Sbjct: 14  IKGCNDPESLTAKMLRNKYLEQHDMKSLDSEENKRFKMLAADVFVGLMENQEKHAS-PDK 72

Query: 705 KIDAENMDEIAASVK 749
           K + EN DEI  S K
Sbjct: 73  KDEIENADEIEESEK 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,346,945
Number of Sequences: 59808
Number of extensions: 426742
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2931631446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)