Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...   165   4e-41
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...   165   4e-41
AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl tr...   120   2e-27
AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical ...    31   1.7  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score =  165 bits (401), Expect = 4e-41
 Identities = 75/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)
 Frame = +3

Query: 291 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 470
           KR Q  W  P      P L +YNSL+RQKE F+P  G RV WY CGPTVYD+SHMGHARS
Sbjct: 166 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 225

Query: 471 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPR--NLNDTIDD 644
           Y+S DILRRV  +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y  E +   +    +D
Sbjct: 226 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCED 285

Query: 645 AVNVINYYEEAVKNAEDPDKK 707
            V  + +++   +   DPDKK
Sbjct: 286 VVAALEHFKTKFETEMDPDKK 306


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score =  165 bits (401), Expect = 4e-41
 Identities = 75/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)
 Frame = +3

Query: 291 KRSQPAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARS 470
           KR Q  W  P      P L +YNSL+RQKE F+P  G RV WY CGPTVYD+SHMGHARS
Sbjct: 165 KRVQKHWDQPKNATPPPQLTVYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARS 224

Query: 471 YMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQKYLYEKYLKEPR--NLNDTIDD 644
           Y+S DILRRV  +YFGYD+ ++MNITD+DDKIIKRARQ +L + Y  E +   +    +D
Sbjct: 225 YLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCED 284

Query: 645 AVNVINYYEEAVKNAEDPDKK 707
            V  + +++   +   DPDKK
Sbjct: 285 VVAALEHFKTKFETEMDPDKK 305


>AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl trna
           synthetase protein2, isoform a protein.
          Length = 179

 Score =  120 bits (288), Expect = 2e-27
 Identities = 51/76 (67%), Positives = 61/76 (80%)
 Frame = +3

Query: 408 VNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYDILYVMNITDIDDKIIKRARQK 587
           V WY CGPTV D+SHMGHARSY+S DILRRV  +YFGYD+ ++MNITD+DDKIIKRARQ 
Sbjct: 53  VGWYICGPTVNDSSHMGHARSYLSLDILRRVFRDYFGYDVEFIMNITDVDDKIIKRARQS 112

Query: 588 YLYEKYLKEPRNLNDT 635
           +L + Y  E  +LN T
Sbjct: 113 HLLKSYFNESLHLNST 128


>AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical
           protein T08B6.2 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = +3

Query: 345 LKLYNSLSRQKEEFIPANG-----NRVNWYSCGPTVYDASHMGHARSYMSF-DILRRVMA 506
           L  YN+ SR    F+ +NG     NR  W+   P +Y   +M    SY++F DI  RV +
Sbjct: 317 LSWYNAKSRSSNHFLISNGQKYEINREEWFDLDPVIY---NMTLNYSYLTFQDIQIRVYS 373

Query: 507 N 509
           +
Sbjct: 374 S 374


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 543 ITDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAV 680
           + D+D KI+ + R K   EK++++   + +  +  +N+I+  E+ V
Sbjct: 295 LLDMDAKIVDKFRDKEKVEKFVRDHERIYEINEKTINMISENEKRV 340


>Z75545-2|CAA99885.1|  327|Caenorhabditis elegans Hypothetical
           protein K10D3.3 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 279 LKMSKRSQ--PAWSPPVRNKERPVLKLYNSLSRQKEEFIPANGNRVNWY 419
           LKMS +       +P V  KE P++K+  ++S  ++ F+P    +V +Y
Sbjct: 80  LKMSDKEDILVETAPSVEKKEEPIVKMEETISITQQSFLPQIKPQVVFY 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,224
Number of Sequences: 27780
Number of extensions: 338960
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)