Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.26 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.26
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 298 LLLDIFNC*NY*ENVIFLLKPNVKFNVTSPDKSIYFY 188
           LLLD+FNC    E +  L   NV  +   P  S Y Y
Sbjct: 607 LLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPSYYSY 643


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 546 TDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKN 686
           T  + KII      Y Y  Y     N N+  ++  N  N Y++  KN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN--NNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 546 TDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVINYYEEAVKN 686
           T  + KII      Y Y  Y     N N+  ++  N  N Y++  KN
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN--NNYKKLYKN 119


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 528 LYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLND 632
           ++V +I+ IDD  ++ + Q    E++L E    ND
Sbjct: 65  IFVRSISKIDDVTMEYSVQLTFREQWLDERLRFND 99


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 540 NITDIDDKIIKRARQKYLYEKYLKEPRNLN 629
           NI  I+ +I K  +   L+ ++LK PR  N
Sbjct: 167 NIAVIEYRIPKSGKGFSLFARFLKNPRPCN 196


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 558 DKIIKRARQKYLYEKYLKEPRNLND 632
           DK+++  R KY + KY K  + L +
Sbjct: 41  DKVLESPRGKYEFSKYDKLKKKLEE 65


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 525 ILYVMNITDIDDKIIKRARQKYLYEKYLKEPRNLNDTIDDAVNVI 659
           +L +  +   D KI+   R+K + EK     +N N  +  AVN+I
Sbjct: 442 MLKIKRLFGKDRKIMDMVREKIIEEK----RKNKNKNLTPAVNII 482


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 127 QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 219
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 127 QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 219
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 127 QCDEIKRRLYLRGENNLKIINRNKYFCLVRL 219
           +CDE+K+   ++G     I  R++Y C+ ++
Sbjct: 45  ECDEMKKDSAVKGIPVSCISGRDRYECIEKV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,069
Number of Sequences: 438
Number of extensions: 4592
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)