Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H12
         (988 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    92   5e-19
At2g31170.1 68415.m03805 tRNA synthetase class I (C) family prot...    91   8e-19
At3g56300.1 68416.m06258 tRNA synthetase class I (C) family prot...    85   5e-17
At2g47310.1 68415.m05906 flowering time control protein-related ...    29   6.3  

>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 41/84 (48%), Positives = 58/84 (69%)
 Frame = +3

Query: 333 ERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANY 512
           E+  LKLYN++++QKE  IP    ++  Y CG T YD SH+GHAR+ +SFD+L R +  +
Sbjct: 4   EKMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYL-KH 62

Query: 513 FGYDILYVMNITDIDDKIIKRARQ 584
             YD+ +V N TD+DDKII RA +
Sbjct: 63  LDYDVTFVRNFTDVDDKIIDRANK 86


>At2g31170.1 68415.m03805 tRNA synthetase class I (C) family protein
           similar to cysteine-tRNA ligase [Escherichia coli]
           GI:41203; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 563

 Score = 91.5 bits (217), Expect = 8e-19
 Identities = 41/80 (51%), Positives = 57/80 (71%)
 Frame = +3

Query: 345 LKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANYFGYD 524
           L L+N++SR+KE F P    +V  Y CG T YD SH+GHAR Y++FD+L R +  + GY+
Sbjct: 65  LWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYL-KHLGYE 123

Query: 525 ILYVMNITDIDDKIIKRARQ 584
           + YV N TD+DDKII RA++
Sbjct: 124 VSYVRNFTDVDDKIIARAKE 143


>At3g56300.1 68416.m06258 tRNA synthetase class I (C) family protein
           similar to cysteinyl-tRNA synthetase [Methanococcus
           maripaludis] GI:6599476; contains Pfam profile PF01406:
           tRNA synthetases class I (C)
          Length = 489

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 37/77 (48%), Positives = 53/77 (68%)
 Frame = +3

Query: 333 ERPVLKLYNSLSRQKEEFIPANGNRVNWYSCGPTVYDASHMGHARSYMSFDILRRVMANY 512
           E+P L LYN++++ KE + P N  ++  Y CG T YD SH+GHAR+ +SFD+L R +  +
Sbjct: 7   EKPDLTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRYL-RH 65

Query: 513 FGYDILYVMNITDIDDK 563
            GY + YV N TD+DDK
Sbjct: 66  LGYQVTYVRNFTDVDDK 82


>At2g47310.1 68415.m05906 flowering time control protein-related /
           FCA gamma-related 
          Length = 512

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 591 LYEKYLKEPRNLNDTIDDAVNVINYYEEAVKNAEDPDKKIDAEN 722
           +YE++LKE   L D    +  + N  +EA++N+E  +  +  +N
Sbjct: 437 MYERWLKEQTRLQDEKIKSPPLNNESQEAIENSEQVESDVLQQN 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,710
Number of Sequences: 28952
Number of extensions: 299732
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2402185656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)