Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H11
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   7.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.9  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 550 NAPQTEQN*WALDSKNNNN 606
           N P T  N W  ++ NN+N
Sbjct: 367 NQPSTSNNRWHNNNGNNSN 385


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 99  NWEEYVAQNVSLACYTEVDGEPDELVGFNIVLVKSIDDIDEDLDTVKG 242
           N  E   QN+SL   +E   EP+       +   ++D+I +  D  KG
Sbjct: 507 NLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNICQASDMYKG 554


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 460 VVAVKTVAVASMPRAFPRGSLAAKSLAPM 374
           +V   +V+ AS+P   P G    K L P+
Sbjct: 190 LVNAPSVSPASLPSISPSGGFLPKWLPPL 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,031
Number of Sequences: 336
Number of extensions: 2709
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)