Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H11
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1065 + 9427870-9427974,9428069-9428121,9428994-9429173,942... 34 0.13
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 31 0.94
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305... 29 6.7
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 29 6.7
10_08_0898 + 21424379-21424792,21424974-21425723 28 8.8
10_01_0204 + 2199778-2200835,2201212-2201311 28 8.8
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 8.8
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 28 8.8
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032 28 8.8
>07_01_1065 +
9427870-9427974,9428069-9428121,9428994-9429173,
9429252-9429492
Length = 192
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 282 ENLCNVFK-YYGVDKYLTSSGLTVLPEHRGQNIGARLFAAREPL 410
+N ++ K GVD+YL SG+ VLP R + +G L A E L
Sbjct: 85 QNEADILKNLQGVDEYLYVSGIAVLPSFRRRKVGTALLKACEAL 128
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 353 ARAPRSEHRSQTLRGQRAPGKRSWHRGDCYRLHGHHVPGLGSEVWLRDVSGTKI 514
AR PR+ QTL G A + + G CYR G H G G LR +
Sbjct: 7 ARLPRATPHLQTLGGGAARRQSAAGAGPCYRAEGGHCHG-GRRPTLRQAKAVSV 59
>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
3057104-3057232,3057313-3057572,3057688-3058001,
3058268-3058491,3058862-3059214,3059489-3059916,
3060031-3061514
Length = 1242
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 446 DGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQVLVHAV-VFEYVAQILR 279
DG S L G +G + S+L + +P RGQVLV V EY + LR
Sbjct: 1008 DGFSLAIEPGQRVALVGPSGAGKSTIVSLLLRFYDPCRGQVLVDGKDVREYNLRFLR 1064
>04_04_0348 + 24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 189 VLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDKYLTSS 338
V+VK I ++ + + GE K + L+E NL V GVD T S
Sbjct: 1168 VIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKS 1217
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 241 ANPGRSCLGH**KRRICATYSNTTAWTST*PRAGSRCCPSTEVRTSE-PDSSRP 399
A PGR +R AT + AW S PR S+ PS+ +S+ P S++P
Sbjct: 194 AAPGRGARS----KRSRATAAAAAAWHSLVPRPPSQSSPSSSCSSSDFPSSNKP 243
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 464 GRGGREDGSSRLYAKSVSQGLSGREESGSDVLTSVLGQHREPARGQV 324
GRGGRE ++R A+ G+ R S +L + R P RG V
Sbjct: 313 GRGGRESATARAGARVSRAGV--RPSPASSILVVHRHRRRRPRRGVV 357
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 147 EVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKLLRTLIEAENLCNV 299
E DG P+EL+ + + + +D D+ + + WKKLL L + + N+
Sbjct: 382 EKDGRPEELIEQRLKSKRFLLILD-DIWKCQSDDWKKLLLPLTKGQTKGNI 431
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 425 HRGDCYRLHGHHVPGLGSEVWLRDVSGTKILRHVKV 532
HRG+ Y+ H H P L +VW + G + H K+
Sbjct: 238 HRGEVYKKH--HPPALADDVWRLEKIGKDGVFHKKL 271
>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
Length = 209
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 341 AHGAARAPRSEHRSQTL-RGQRAPGKRSWHRGDCYRLHGHHVPG-LGSEVWLRDVSGTKI 514
AH + RS+T + A G+RSWH G HGH P L + + V+ K
Sbjct: 123 AHRRCVSVEFSKRSRTRSKASEADGQRSWHNG-----HGHWFPDMLSNGSTMEVVNSVKE 177
Query: 515 LRHVKVRNKSD-*MHH 559
H R S MHH
Sbjct: 178 KHHSFQRMHSHWHMHH 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,765
Number of Sequences: 37544
Number of extensions: 304967
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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