Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H11
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9)           34   0.18 
SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)           29   3.9  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   28   8.9  
SB_16734| Best HMM Match : HLH (HMM E-Value=2.4e-08)                   28   8.9  
SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)                    28   8.9  

>SB_37646| Best HMM Match : Cob_adeno_trans (HMM E-Value=6.9)
          Length = 497

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
 Frame = +3

Query: 120 QNVSLACYTEV-DGEPD-ELVGFNIVLVKSIDDIDEDL-DTVKGESWKKLLRTLI---EA 281
           +++S   Y E+ D  PD E       LV+ I  +DED+ D VK +  K L+   +   E 
Sbjct: 97  RDISAGVYQEILDSVPDKETPAVLAGLVQHI--LDEDIPDDVKHKLLKPLVPVRVWTEEV 154

Query: 282 ENLCNVFKYYGVDKYLTSSGLTVLPEHRGQNIGARLFAAREPLGNALGIEATATVFTATT 461
           + L    +  G+D     S L      RGQ+I A ++     LG    I     V   TT
Sbjct: 155 DPLLPGRRQEGLDPKEYYSRLVGGAHLRGQDISAGVYQEIRDLGGTGVIALKPVVRVMTT 214

Query: 462 SQVLAAKCG-YETLAELKYSDMLKFGINLTECTTDRAKLMGTRFK 593
             +  A+C     + E +     K GI+   C   R  L+  R++
Sbjct: 215 ILMTTARCELLAPITEKEGRSEQKIGIDAGICEKGREYLVYVRYE 259


>SB_27882| Best HMM Match : Cob_adeno_trans (HMM E-Value=3.6)
          Length = 822

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = +3

Query: 120 QNVSLACYTEV-DGEPD-ELVGFNIVLVKSIDDIDEDL-DTVKGESWKKLLRTLI---EA 281
           +++S   Y E+ D  PD E       LV+ I  +DED+ D VK +  K L+   +   E 
Sbjct: 97  RDISAGVYQEILDSVPDKETPAVLAGLVQHI--LDEDIPDDVKHKLLKPLVPVRVWTEEV 154

Query: 282 ENLCNVFKYYGVDKYLTSSGLTVLPEHRGQNIGARLFAAREPLGNALGIEATATVFTATT 461
           + L    +  G+D     S L      RGQ+I A ++     LG    I     V   TT
Sbjct: 155 DPLLPGRRQEGLDPKEYYSRLVGGAHLRGQDISAGVYQEIRDLGGTGVIALKPVVRVMTT 214

Query: 462 SQVLAAKC 485
             +  A+C
Sbjct: 215 ILMTTARC 222


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 509 KILRHVKVRNKSD*MHHRQSKTNGHSIQKTTITRIRNLFYLSTKHARAKKRIILI 673
           K  RH ++R K+      + KT  H+IQ  T   +R     +T+HAR++ +  +I
Sbjct: 711 KTTRHARLRYKTTRHARLRFKTTRHAIQNDTHAWLRQ---KTTRHARSRHKTAVI 762


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 367 PRCSGSTVSPLEVKYLSTP*YLNTLHKFSASISVL 263
           P   GST+S    KY S P Y +T+ +FS    +L
Sbjct: 12  PHLHGSTISRFGKKYHSLPPYGSTISRFSKKYRLL 46


>SB_16734| Best HMM Match : HLH (HMM E-Value=2.4e-08)
          Length = 178

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 302 QILRRGQVLDLERAHGAARAPRSEHRSQTLRGQRAPGKRSWHRGDCYRLHGHHVP 466
           Q+L   ++L+        R+P S  R+Q    +R+P  R  H  DC  L    VP
Sbjct: 7   QLLEAAKILEERDEVAKKRSPNSS-RNQKKSARRSPSYRRAHLRDCLELLKELVP 60


>SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)
          Length = 388

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 435 TATVFTATTSQVLAAKCGYETLAELKYSDMLKF 533
           TA    A T+   AA+   ET AELKYS  L F
Sbjct: 56  TAAETAAETAAETAAETAAETAAELKYSQTLFF 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,691,686
Number of Sequences: 59808
Number of extensions: 350008
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)