BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fdpeP01_F_H11 (901 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 29 6.0 Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical pr... 29 6.0 Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical pr... 29 6.0 AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 6.0 AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 6.0 AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 6.0 AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 6.0 AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 6.0 AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 6.0 >Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical protein M04C3.2 protein. Length = 606 Score = 28.7 bits (61), Expect = 6.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 243 ESWKKLLRTLIEAENLCNVFKYYGVDK 323 ESWKKLL L+E ++L + Y DK Sbjct: 294 ESWKKLLEKLLEKDDLVIHYFYRNEDK 320 >Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical protein C25F9.4 protein. Length = 592 Score = 28.7 bits (61), Expect = 6.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 243 ESWKKLLRTLIEAENLCNVFKYYGVDK 323 ESWKKLL L+E ++L + Y DK Sbjct: 293 ESWKKLLEKLLEKDDLVIHYFYRNEDK 319 >Z68337-8|CAA92749.2| 241|Caenorhabditis elegans Hypothetical protein M7.12 protein. Length = 241 Score = 28.7 bits (61), Expect = 6.0 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Frame = +3 Query: 345 TVLPEHRGQNIGARLFAAREPLGNALGIEATATVFTATT--SQVLAAKCGYETLAELKYS 518 +V H+ Q + ++ E +EA++ V A++ +Q+L +K GYET+A S Sbjct: 154 SVNKNHQRQGLASKFMNWTEKKELLKSVEASSIVAEASSLANQILLSKRGYETVASTLLS 213 Query: 519 DMLKF-GINLTECT--TDRAKLM 578 + G + C TDR L+ Sbjct: 214 SRIDVNGKQILVCDDGTDRVDLV 236 >AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform g protein. Length = 1604 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1529 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1586 Query: 369 QNIGARL 389 + I A L Sbjct: 1587 ETIAAVL 1593 >AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform f protein. Length = 1818 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1743 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1800 Query: 369 QNIGARL 389 + I A L Sbjct: 1801 ETIAAVL 1807 >AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform e protein. Length = 1954 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1879 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1936 Query: 369 QNIGARL 389 + I A L Sbjct: 1937 ETIAAVL 1943 >AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform d protein. Length = 1995 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1920 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1977 Query: 369 QNIGARL 389 + I A L Sbjct: 1978 ETIAAVL 1984 >AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform h protein. Length = 2006 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1931 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1988 Query: 369 QNIGARL 389 + I A L Sbjct: 1989 ETIAAVL 1995 >AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory abnormality protein1, isoform a protein. Length = 2007 Score = 28.7 bits (61), Expect = 6.0 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +3 Query: 201 SIDDIDEDLDTVKGESWKKLLRTLIEAENLCNVFKYYGVDK----YLTSSGLTVLPEHRG 368 S D I E + +GE + +LR + +NL + Y+G+D Y GL+ + + Sbjct: 1932 SADCISESYRSTEGEEYCNILRPFLRGQNLYSF--YFGLDSVNPMYRPKDGLSGRIQRKN 1989 Query: 369 QNIGARL 389 + I A L Sbjct: 1990 ETIAAVL 1996 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,754,165 Number of Sequences: 27780 Number of extensions: 261551 Number of successful extensions: 813 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 813 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2286823924 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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