Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H11
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07970.1 68418.m00926 dentin sialophosphoprotein-related cont...    29   5.6  
At1g41650.1 68414.m04798 hypothetical protein                          29   5.6  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    28   7.3  
At3g15340.1 68416.m01936 expressed protein                             28   7.3  
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro...    28   7.3  
At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    28   7.3  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   9.7  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   9.7  
At4g05636.1 68417.m00878 hypothetical protein                          28   9.7  
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s...    28   9.7  
At1g72030.1 68414.m08326 GCN5-related N-acetyltransferase (GNAT)...    28   9.7  

>At5g07970.1 68418.m00926 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 1097

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 330 TSSGLTVLPEHRGQNIGARLFAAR---EPLGNALGIEATATVFTATTSQVLAAKCG 488
           +SSGL + PEH   N+ A+ F       P+G   G +A    F++   ++LAA+ G
Sbjct: 276 SSSGLVITPEHGHANLMAQQFETSLYGMPVG---GTDAPQNAFSSFQMKMLAAQHG 328


>At1g41650.1 68414.m04798 hypothetical protein
          Length = 178

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 554 HHRQSKTNGHSIQKTTITRIRNL-FYLSTKHARAKKRI 664
           HH Q  + GHSI  +  T+IR     LST+  R + ++
Sbjct: 101 HHHQHHSTGHSITSSQSTQIRTQPEKLSTREGRGEDKV 138


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 3/145 (2%)
 Frame = +3

Query: 153  DGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWKKLLRTLIEAEN-LCNVFKYYG--VDK 323
            D E D L    + LVKS D+   ++  VKG  ++ +L+TL +A N      ++ G    K
Sbjct: 1406 DKERDLLAKLLVNLVKSADNALNEVQLVKG--FESVLKTLEDAVNDAPKAAEFLGRIFGK 1463

Query: 324  YLTSSGLTVLPEHRGQNIGARLFAAREPLGNALGIEATATVFTATTSQVLAAKCGYETLA 503
             +T   +T+        IG  +    E  G+ +       V   +  +++  + G ETL 
Sbjct: 1464 SVTEKVVTL------TEIGRLIQEGGEEPGSLIEFGLGGDVL-GSVLEMIKTEAGEETLV 1516

Query: 504  ELKYSDMLKFGINLTECTTDRAKLM 578
            E++ S  L+   N      +R+K++
Sbjct: 1517 EIRRSSGLRIE-NFKPHAPNRSKIL 1540


>At3g15340.1 68416.m01936 expressed protein
          Length = 487

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 320 QVLDLERAHGAARAPRSEHRSQTLRGQRAPGKRSWHR 430
           +VLD+++AH      RS  R + LR QR  GK ++++
Sbjct: 254 RVLDVKKAHILEERDRSYERIKMLRIQRDKGKAAFYQ 290


>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
           protein similar to SP|Q12149 Exosome complex exonuclease
           RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
           {Saccharomyces cerevisiae}
          Length = 880

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = +3

Query: 75  VSIETIMKNWEEYVAQNVSLACYTEVDGEPDELVGFNIVLVKSIDDIDEDLDTVKGESWK 254
           V  E+ +K   E +A+    A  TE        +GF  ++  S  + D  +DT+      
Sbjct: 122 VETESQLKELAEILAKEQVFAVDTE-QHSLRSFLGFTALIQISTHEEDFLVDTIALHDVM 180

Query: 255 KLLRTLIEAENLCNVFKYYGVD 320
            +LR +    N+C VF  +G D
Sbjct: 181 SILRPVFSDPNICKVF--HGAD 200


>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 335 ERAHGAARAPRSEHRSQTLRGQRAPGKRSWHRGDCYRLHGH 457
           ER HG  + P SEH+  TL G++ P    W   DC  +  H
Sbjct: 526 ERRHGLRQDPSSEHQVFTL-GEKKP----WKMIDCTSIPDH 561


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 597 VF*IECPLVLLCLWCIQSDLFRTLTCLSILVPLTSRSHTSL 475
           VF + C LV   LW I S L R    L ++  L +  H SL
Sbjct: 144 VFVLTCSLVSFALWYISSGLLRVSVAL-LIAHLATILHASL 183


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 597 VF*IECPLVLLCLWCIQSDLFRTLTCLSILVPLTSRSHTSL 475
           VF + C LV   LW I S L R    L ++  L +  H SL
Sbjct: 144 VFVLTCSLVSFALWYISSGLLRVSVAL-LIAHLATILHASL 183


>At4g05636.1 68417.m00878 hypothetical protein
          Length = 193

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 554 HHRQSKTNGHSIQKTTITRIRNL-FYLSTKHARAKKRI 664
           HH Q  + GHSI  +  T+IR     LST+  R + ++
Sbjct: 116 HHHQHHSTGHSITSSQSTQIRTQPDKLSTRKRRGEDKV 153


>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
           strong similarity to At1g32300, At5g56490, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 590

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 252 KKLLRTLIEAENLCNVFKYYGV-DKYLTSSGLTVLPEHRGQNIGARLFAAREPL 410
           K LL+  I++++LC +  YYG+  +Y+TSS   +  E    +     + A +PL
Sbjct: 418 KSLLK--IDSKSLCGLELYYGILMRYVTSSPAYLGKETEAIDFDITYYRANDPL 469


>At1g72030.1 68414.m08326 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 256

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 273 IEAENLCNVFKYY-GVDKYLTSSGLTVLPEHRGQNIGARLFAAREPLGNALGIEATA 440
           + A+   +V +Y+ GV++YL  SGL V    R + + + L  A + L    G +  A
Sbjct: 154 VTAQTESSVLRYFPGVEEYLYVSGLAVSKSQRRKKMASTLLKACDVLCYLWGFKLLA 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,070
Number of Sequences: 28952
Number of extensions: 243605
Number of successful extensions: 746
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)