Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H08
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    31   0.28 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.4  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   4.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   7.9  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   7.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   7.9  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 319 MSISC-LRLL-TRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVA 188
           +SISC +RLL T+ +    VE I  T   A +V C  +P  NTE A
Sbjct: 154 ISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEPA 199


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 157  SWFTMTTPITPLWAWILLIVSSTSVAIMYEP-QKLNNLN 44
            SWFT T P T   +  +++VS T+ A    P  +  NLN
Sbjct: 1097 SWFTTTVPATGTRSGSVIVVSPTAPACSSTPFAECPNLN 1135


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 301 RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSNELLI 167
           RL+T   ++ F+ ++  +TF  F ++CP    Y    AL N+ +I
Sbjct: 47  RLITVEKIDVFINAMVPSTFALFCMACPYL-LYTAVDALLNKDVI 90


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 349 TINMNSLSGAMSISCL----RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTE 194
           T+ +N  S  MS+  +    R L RR ++ +   +S+TT ++  V CP+ PA   E
Sbjct: 569 TLYLNCNSKPMSLGSMFEHYRKLARRLISHY---LSKTTLISLLVGCPV-PAIPAE 620


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 428 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 532
           ++  Y+  +GT+ + P +I LA+RN  S    + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +2

Query: 350  YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 526
            Y+ + G ++YL   +   ++   +  ++ HY+ +  T+    +  F+   ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,897
Number of Sequences: 5004
Number of extensions: 66931
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)