Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H08
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1446 - 30220158-30220278,30220866-30222229                       29   6.3  
06_03_1434 - 30139990-30140110,30140698-30142061                       29   6.3  
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    28   8.3  
09_01_0154 + 2298432-2299415                                           28   8.3  

>06_03_1446 - 30220158-30220278,30220866-30222229
          Length = 494

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 SLLRRPGMWFVKWTPQMS*HSFESEVEDMRYSLH 324
           S +RRPG W   WT  +   S+E    D   +LH
Sbjct: 338 SSVRRPGQWLTTWTMPIPVTSWEDWRPDCTANLH 371


>06_03_1434 - 30139990-30140110,30140698-30142061
          Length = 494

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 SLLRRPGMWFVKWTPQMS*HSFESEVEDMRYSLH 324
           S +RRPG W   WT  +   S+E    D   +LH
Sbjct: 338 SSVRRPGQWLTTWTMPIPVTSWEDWRPDCTANLH 371


>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 372 FNPMCSV*QLI*ILCPVQ*VSHVFDF*LEGMSTHLWSPFHE 250
           F PM  + + I  LC  +  +H ++F     S+ LW PFHE
Sbjct: 69  FYPMEGLLEKIDHLCKAR--NHAYNFEFWPFSSALWKPFHE 107


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 25/97 (25%), Positives = 40/97 (41%)
 Frame = -3

Query: 361 VFCITINMNSLSGAMSISCLRLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALS 182
           V  ++I ++S  G  +   L L  R  + +  +     T +A  V   I P Y    ALS
Sbjct: 206 VIPVSIAVSSAEGRWAAPALWLAWRL-MKARRKEAGVLTLIACLVPAAICPVYTIAAALS 264

Query: 181 NELLIGIPSWFTMTTPITPLWAWILLIVSSTSVAIMY 71
           +ELL     W         L    L ++S+T+  + Y
Sbjct: 265 DELLFTFYVWLLGVVFGFFLLPVALQLLSTTAATVFY 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,195
Number of Sequences: 37544
Number of extensions: 365963
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)