Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H08
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)             111   9e-25
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)             111   9e-25
SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)             103   1e-22
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   1e-21
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   2e-17
SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)              77   2e-14
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)                 33   0.23 
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                30   2.1  
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)         30   2.8  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   3.7  
SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)                  29   3.7  
SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)                  28   8.5  
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score =  111 bits (266), Expect = 9e-25
 Identities = 50/94 (53%), Positives = 74/94 (78%)
 Frame = +3

Query: 78  MATEVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVRE 257
           MA+ VE  +KRIQ+HKGV+G ++VN EG PI+S LDN+T++LYA     L + AR+ VR+
Sbjct: 64  MASSVENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRD 123

Query: 258 MDSTNELTFLRVRSRRHEILIAPDREFILIVIQN 359
           +D  N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 124 IDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 157


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score =  111 bits (266), Expect = 9e-25
 Identities = 50/94 (53%), Positives = 74/94 (78%)
 Frame = +3

Query: 78  MATEVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVRE 257
           MA+ VE  +KRIQ+HKGV+G ++VN EG PI+S LDN+T++LYA     L + AR+ VR+
Sbjct: 5   MASSVENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRD 64

Query: 258 MDSTNELTFLRVRSRRHEILIAPDREFILIVIQN 359
           +D  N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 65  IDPQNDLSILRVKSRKYEIIIAPYEEYMLIVVQS 98


>SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)
          Length = 101

 Score =  103 bits (248), Expect = 1e-22
 Identities = 46/91 (50%), Positives = 69/91 (75%)
 Frame = +3

Query: 87  EVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDS 266
           EVEE +KRI  H GV G +I N EG+ I+S++DN+T+ +Y   I  +T+ AR+ VR++D 
Sbjct: 6   EVEEVLKRIINHPGVTGSIITNPEGVAIRSTMDNSTTQIYLSNIQSMTQMARSAVRDLDP 65

Query: 267 TNELTFLRVRSRRHEILIAPDREFILIVIQN 359
            N+L FLR+RSR++EIL+AP+ ++ LIVIQ+
Sbjct: 66  LNDLKFLRIRSRKYEILVAPENDYTLIVIQS 96


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score =  101 bits (241), Expect = 1e-21
 Identities = 49/95 (51%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
 Frame = +3

Query: 75  IMAT-EVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVV 251
           IM T EVE T++RI  H GVMG +++N++G PIKSS+D  T+ LYA     L   A + V
Sbjct: 106 IMTTSEVENTLQRISLHPGVMGWLVINNQGEPIKSSMDIPTTQLYASEFAPLAHFAHSAV 165

Query: 252 REMDSTNELTFLRVRSRRHEILIAPDREFILIVIQ 356
           R+MD  NEL F+RVR+ + E ++APD E++LIVIQ
Sbjct: 166 RDMDPQNELRFIRVRTNKMEFMVAPDNEYLLIVIQ 200


>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/98 (39%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
 Frame = +3

Query: 78  MATEVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVRE 257
           MA +VE  ++RIQ+HKGV+G  ++N EG  +++S+D  T+  YA +   L   AR  VR+
Sbjct: 1   MALQVERRLERIQSHKGVLGSAVINPEGKVLRTSMDTTTTNQYANMCKNLASMARGTVRD 60

Query: 258 MDSTNELTFLRVRSRRHEILIAPDR----EFILIVIQN 359
           +D  ++L  LRVR++ HE++IAP+R     F ++ +Q+
Sbjct: 61  VDPADDLLILRVRTKEHEVIIAPERTGDGTFFIVALQS 98


>SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)
          Length = 111

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/89 (39%), Positives = 56/89 (62%)
 Frame = +3

Query: 96  ETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDSTNE 275
           + I RI+ H  V GV+++N +G+ + +SLD   +  Y      L E AR  +R+ D  ++
Sbjct: 14  DRIHRIEGHTNVSGVLVINTKGLILHTSLDTTQTTAYTQQCVPLVELARATIRDTDPEDD 73

Query: 276 LTFLRVRSRRHEILIAPDREFILIVIQNT 362
           L F RVR+ +HE++IAP+ ++ LIVIQ T
Sbjct: 74  LRFFRVRTLKHELIIAPEDKYTLIVIQKT 102


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 31/67 (46%), Positives = 48/67 (71%)
 Frame = +3

Query: 90  VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 269
           VE+ + RIQ  KGV G++IVN +G+PI+S+LDN++++ Y  +   +   AR+VVR+ D T
Sbjct: 265 VEQILDRIQQQKGVTGLIIVNQDGMPIRSTLDNSSTLQYVNMCKTMCGIARSVVRDTDPT 324

Query: 270 NELTFLR 290
           N+L  LR
Sbjct: 325 NDLKILR 331


>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
          Length = 508

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 660 DHHKCNISIFNIIKKFHRKEITLFYNSIVCKRNNLC 767
           D H+C  ++ +  KK  RK    F++   CKRN+LC
Sbjct: 99  DKHECATTVNDAPKKRLRKRCRFFFSRSGCKRNDLC 134


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +3

Query: 87  EVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGL--IGQLTEKARNVVREM 260
           ++EE I ++Q  K     ++++ +G   K  ++   + L        QL E+   + RE+
Sbjct: 118 KLEEMIAKLQKEKREEQTLVMDGKGF--KQDIERMKNELETERKRTSQLVEERDEMAREL 175

Query: 261 DSTN-ELTFLRVRSRRHEILIAPDREFILIVIQNTSD*IFTYKKQ 392
           D+   EL + +  +         D   + + +++T D +FTY+K+
Sbjct: 176 DNAKKELQYHKQTTEECATADDDDYAMLKLKLKSTKDELFTYQKR 220


>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
          Length = 1354

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 105 KRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREM 260
           KR+   + V  VVIV+ EGI  ++ LD  +   YA        K R V RE+
Sbjct: 37  KRVPVGRVVYPVVIVDVEGIKCRALLDTGSGSSYASAALLDRLKKRQVTREV 88


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 648 FSIGDHHKCNISIFNIIKKFHRKEITLFYNSIVCKR 755
           F + D H  ++S +N++   H K+   F N I+C+R
Sbjct: 10  FDLTDSHSVSLSQYNVLHDIHLKD--YFKNPIMCRR 43


>SB_5458| Best HMM Match : E-MAP-115 (HMM E-Value=0.3)
          Length = 274

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 648 FSIGDHHKCNISIFNIIKKFHRKEITLFYNSIVCKR 755
           F + D H  ++S +N++   H K+   F N I+C+R
Sbjct: 14  FDLTDSHSVSLSQYNVLHDIHLKD--YFKNPIMCRR 47


>SB_54688| Best HMM Match : DUF963 (HMM E-Value=0.017)
          Length = 319

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 725 SNFFSMKLFYYIKN*YIALMVIANTKITLV*KAFSAINL 609
           +NF+S   FY   N Y+A  + + T + L    +SA NL
Sbjct: 257 TNFYSATNFYLATNLYLATNLYSATNLYLATNLYSATNL 295


>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 21  SLYGNSLRFKLLSF*GSYIMATEVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSV 200
           +L G++ R   L F G+YI++  ++ +I+   A  G     +V H+ +     L N T V
Sbjct: 474 TLQGHTNRVYSLQFDGTYIVSGSLDTSIRVWHAETGQCLHTLVGHQSLTSGMELRNNTLV 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,683
Number of Sequences: 59808
Number of extensions: 440216
Number of successful extensions: 951
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)