Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H07
         (1003 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16RI0 Cluster: Glutamate decarboxylase; n=4; Endoptery...    50   1e-04
UniRef50_Q49AK1 Cluster: GAD1 protein; n=10; Euteleostomi|Rep: G...    38   0.54 
UniRef50_Q99259 Cluster: Glutamate decarboxylase 1; n=61; Bilate...    38   0.54 
UniRef50_Q9VPH6 Cluster: CG5618-PA, isoform A; n=4; Diptera|Rep:...    36   1.6  
UniRef50_Q17JW3 Cluster: Glutamate decarboxylase; n=1; Aedes aeg...    34   6.6  

>UniRef50_Q16RI0 Cluster: Glutamate decarboxylase; n=4;
           Endopterygota|Rep: Glutamate decarboxylase - Aedes
           aegypti (Yellowfever mosquito)
          Length = 425

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 32/95 (33%), Positives = 35/95 (36%)
 Frame = +3

Query: 480 IAXAXNTXQXTFEVXPXXXLIELXVXXXILXPXXXPXGDXIXSPVGIVXMXXXXXXXXXX 659
           I  A NT Q TFEV P   LIE  +    L       GD I SP G +            
Sbjct: 94  ITDALNTSQYTFEVGPVFTLIEDALIKKCLALFGFQDGDGILSPGGSISNMYAMVAARFR 153

Query: 660 XXPXFDTKGXXXLPEXXIXXPEDLHXSIKKTXHWL 764
             P     G    P       E+ H SIKK  HWL
Sbjct: 154 ALPDVKRTGLANQPTLVAFTSEEAHYSIKKAVHWL 188


>UniRef50_Q49AK1 Cluster: GAD1 protein; n=10; Euteleostomi|Rep: GAD1
           protein - Homo sapiens (Human)
          Length = 425

 Score = 37.5 bits (83), Expect = 0.54
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
 Frame = +3

Query: 495 NTXQXTFEVXPXXXLIELXVXXXI--LXPXXXPXGDXIXSPVGIVXMXXXXXXXXXXXXP 668
           NT   T+E+ P   L+E      +  +       GD I SP G +              P
Sbjct: 210 NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFP 269

Query: 669 XFDTKGXXXLPEXXIXXPEDLHXSIKKTXHWLXF 770
              TKG   +P+  +   E  H SIKK    L F
Sbjct: 270 EVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 303


>UniRef50_Q99259 Cluster: Glutamate decarboxylase 1; n=61;
           Bilateria|Rep: Glutamate decarboxylase 1 - Homo sapiens
           (Human)
          Length = 594

 Score = 37.5 bits (83), Expect = 0.54
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
 Frame = +3

Query: 495 NTXQXTFEVXPXXXLIELXVXXXI--LXPXXXPXGDXIXSPVGIVXMXXXXXXXXXXXXP 668
           NT   T+E+ P   L+E      +  +       GD I SP G +              P
Sbjct: 210 NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFP 269

Query: 669 XFDTKGXXXLPEXXIXXPEDLHXSIKKTXHWLXF 770
              TKG   +P+  +   E  H SIKK    L F
Sbjct: 270 EVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 303


>UniRef50_Q9VPH6 Cluster: CG5618-PA, isoform A; n=4; Diptera|Rep:
           CG5618-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 510

 Score = 35.9 bits (79), Expect = 1.6
 Identities = 24/95 (25%), Positives = 32/95 (33%)
 Frame = +3

Query: 480 IAXAXNTXQXTFEVXPXXXLIELXVXXXILXPXXXPXGDXIXSPVGIVXMXXXXXXXXXX 659
           +  A N    T+EV P   LIE  V   I        GD I +P G              
Sbjct: 115 VTEAMNGSTYTYEVAPVFSLIETEVIATICKLAGYKEGDGIFAPGGSTSNMYGMVLARYK 174

Query: 660 XXPXFDTKGXXXLPEXXIXXPEDLHXSIKKTXHWL 764
             P   T G   +    +   ++ H S  K  +WL
Sbjct: 175 IAPEVKTSGMFGMRPLVLFTSDESHYSFVKAANWL 209


>UniRef50_Q17JW3 Cluster: Glutamate decarboxylase; n=1; Aedes
           aegypti|Rep: Glutamate decarboxylase - Aedes aegypti
           (Yellowfever mosquito)
          Length = 540

 Score = 33.9 bits (74), Expect = 6.6
 Identities = 21/92 (22%), Positives = 32/92 (34%)
 Frame = +3

Query: 489 AXNTXQXTFEVXPXXXLIELXVXXXILXPXXXPXGDXIXSPVGIVXMXXXXXXXXXXXXP 668
           A N  Q T+E  P   L+E       L       G+ + +P G +              P
Sbjct: 151 ALNACQFTYEAAPVFSLVESFTLKYFLKLCGFEAGEGVFTPGGSMANMYAPAMARHRLFP 210

Query: 669 XFDTKGXXXLPEXXIXXPEDLHXSIKKTXHWL 764
                G     +  +   ED H S+ K+ +WL
Sbjct: 211 ENKKHGMYSCQKLKMFTSEDSHYSVTKSANWL 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 342,852,295
Number of Sequences: 1657284
Number of extensions: 2678516
Number of successful extensions: 1425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 94714307864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)