Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_H06
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.31 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   2.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 692 SQNLTNVSFDEVTMQFFPFINDTLVITPLWPLNLTLPVSD 573
           S  L   S    T Q FP+++DTL I P   L L+   S+
Sbjct: 447 SHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTSN 486


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 550 EVILWDVISETGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 705
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 95  EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 146


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 550 EVILWDVISETGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 705
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 111 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 162


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 550 EVILWDVISETGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 705
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 168 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 219


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 336 CLFTKFHVPNNNMFTCSNSDVSTTNT 259
           CLF +  + N+N+F  S  DV   +T
Sbjct: 59  CLFHRLALMNDNVFDVSKFDVYLNDT 84


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 332 FSPSFMSQIITCSHAPTAMYLPLIPFNVTCVLLQSALAIILKE 204
           F PSF S  +       A+   L+  + +CV+  +  A++ K+
Sbjct: 223 FWPSFNSAALEGDDQQRAIINTLLSISASCVIAFATSALVSKD 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,066
Number of Sequences: 438
Number of extensions: 5784
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)