Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H05
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 49 6e-06
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 48 1e-05
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 48 1e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 47 2e-05
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 44 2e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 42 0.001
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 40 0.003
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 37 0.019
09_01_0004 - 133130-133897 29 5.2
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 6.8
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 28 9.0
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 28 9.0
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 28 9.0
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 48.8 bits (111), Expect = 6e-06
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KK K + PKR M+ +M + + R +K+ NP L TEIAKK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 48.0 bits (109), Expect = 1e-05
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +2
Query: 92 KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWK 265
+ +F++ + K K +KPKRP SA+ +++ R+ K ++P ++ V+ I K GG+ WK
Sbjct: 16 RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75
Query: 266 SMKD 277
SM D
Sbjct: 76 SMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/47 (44%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +2
Query: 143 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 280
K KRP +A+ L+++ R++ K+E+P + V+ +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KK K + PKR ++ +M + + R +K+ NP L TEIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 280
RKK + KPKRP SA+ ++++ R++ ++ +P + V ++K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
+KK K KPK+PMSAY ++ R + +E V EI + GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326
Score = 38.3 bits (85), Expect = 0.008
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWXXXXXXXX 313
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 314 XXXXXDLESY 343
D+E Y
Sbjct: 472 AAYKRDMEEY 481
Score = 35.9 bits (79), Expect = 0.045
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 125 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
K K + K+P AY+LW +IK E+P E++ G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 101 FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKD 277
FK RKK KPKR ++ + +L R Q ++P + V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 278 K 280
+
Sbjct: 70 E 70
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 37.1 bits (82), Expect = 0.019
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 143 KPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 271
+PK+P +A+ ++ R+ K ENP ++ + E+ K GE W +M
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>09_01_0004 - 133130-133897
Length = 255
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 340 LQCQWRWWRRGRKEGSKTREKG 405
L+C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Frame = +1
Query: 340 LQCQWRWWR-----RGRKEGSKTREKG 405
LQC+ RWWR RGR G + R G
Sbjct: 21 LQCRERWWRRRPVHRGRGRGGRRRRSG 47
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 139 GQAEASYVRIHAVVKQR-EGTDKI*KSWLKSNRNSQKRR*NLEINERQN*MGTESCQGQG 315
G+ + ++ KQ+ E T K K + + QK++ N ++ N G Q G
Sbjct: 591 GKKQTKNKQVSLGEKQKAENTAKPWKKFKNDYKQDQKKQVNFIGDDSNNGEGKGKRQ-LG 649
Query: 316 AICKRPRIL 342
AICKRPR +
Sbjct: 650 AICKRPRTM 658
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 306 LAAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFI 199
L F + + S + + PPF+A +V + PG +F+
Sbjct: 64 LQGFLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 252 PPFLAISVTLKPGFSDFICSLALFNHSMYADIGRF 148
PP + S L G +C + NH YAD GRF
Sbjct: 45 PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,696,591
Number of Sequences: 37544
Number of extensions: 252551
Number of successful extensions: 723
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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