Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H05
(915 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 83 4e-16
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 50 3e-06
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 47 2e-05
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 45 7e-05
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 45 1e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 44 1e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 44 1e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 44 2e-04
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 42 7e-04
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 41 0.002
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 40 0.004
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 38 0.011
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 38 0.015
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 36 0.046
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 36 0.060
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 36 0.060
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 34 0.14
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 30 3.0
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 30 3.0
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 82.6 bits (195), Expect = 4e-16
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWXXXX 301
KK K + PKR MSAYMLWLN R++IK +NPG+ VTE++K GE+WK++ DK++W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 302 XXXXXXXXXDLESYNAN 352
++ YN N
Sbjct: 594 AIEKQKYVQRMKEYNEN 610
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 50.0 bits (114), Expect = 3e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 128 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
VK + KRPM+A+M+W R +I ENP + +EI+K+ G WK + D
Sbjct: 321 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 50.0 bits (114), Expect = 3e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +2
Query: 128 VKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
VK + KRPM+A+M+W R +I ENP + +EI+K+ G WK + D
Sbjct: 4 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 125 KVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
K D+ KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 47.2 bits (107), Expect = 2e-05
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEW 289
+K+ K +KPKR +SAY ++N R+ +K +NP ++K GE+W M DKT++
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQY 151
Score = 35.9 bits (79), Expect = 0.046
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
K +KPK SAY +L RE+++ E + + +K E WK+M ++
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEE 56
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +2
Query: 137 TDKP--KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
T KP KRPM+A+M+W +AR ++ + P L E++K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 45.2 bits (102), Expect = 7e-05
Identities = 16/54 (29%), Positives = 35/54 (64%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
++K K+ +P +P+SAY ++ + I+ +NP + EIAK G++W+++ ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEE 969
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 119 RKKV-KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
RKK K + PK P++ Y+ +LN RE+++SENP L E+ + G +W +
Sbjct: 167 RKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQL 218
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KRPM+A+M+W + R Q+ +ENP L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KRPM+A+M+W + R Q+ +ENP L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
D KRP++++M+W R + ENP +R EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
K K KRPM+++M+W SAR ++ + P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
KK KRPM+A+M+W R ++ E+P + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
K D KRPM+AYM+W R +I E P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 42.3 bits (95), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLW---LNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
RKK +KPK P++ Y+ + LNS RE +K ++P L EI K G+ W S+
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSL 238
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 41.9 bits (94), Expect = 7e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
KRPM+++M+W R + ENP L EI+K G+ W + K
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 41.9 bits (94), Expect = 7e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KRPM+ +M+W R QI ENPG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 41.5 bits (93), Expect = 0.001
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +2
Query: 137 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
T++ KRPM+A+M+W R ++ NP L E++K G W+++
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKS-ENPGLRVTEIAKKGGEIWKSMKDK 280
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 40.7 bits (91), Expect = 0.002
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +2
Query: 137 TDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
++K KRP++A++LW R I +ENP + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 39.5 bits (88), Expect = 0.004
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +2
Query: 146 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
P++P+ YM + +Q+K++NP ++ +I K G++W+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 143 KPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 286
K KRPM+A+M+W R I P EI+ + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 37.9 bits (84), Expect = 0.011
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 155 PMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
P+SA+ LW N AR+ + NP + ++ KK WK + +K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
Score = 35.9 bits (79), Expect = 0.046
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
++PK P+++Y + R ++ + P L+ TE+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 37.5 bits (83), Expect = 0.015
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 92 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQI--KSENPGLRVTEIAKKGGEIWK 265
+ Y K K DKPKRP +AY L+L + R+++ K+ G ++ +A GE W+
Sbjct: 559 QRYLKESGKNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWR 615
Query: 266 SMKDK 280
M D+
Sbjct: 616 EMSDE 620
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +2
Query: 119 RKKVKMTDKP--KRPMSAYMLWLNSAREQIKSEN-----PGLRVTEIAKKGGEIWKSMKD 277
RKK D P KR SAY+ + + R ++K+++ P + E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 278 K 280
+
Sbjct: 545 E 545
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 35.9 bits (79), Expect = 0.046
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEW 289
D+ + + + LWL R+QI+ ENP + ++ K + WK + +K W
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVW 378
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 35.5 bits (78), Expect = 0.060
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
D+ + + + LWL R+QI+ ENP + ++ K + WK +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 35.5 bits (78), Expect = 0.060
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
KRPM+A+M+W + R ++ + P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 34.3 bits (75), Expect = 0.14
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
K PM+A+M+ R+ S NPG+ +E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 32.3 bits (70), Expect = 0.56
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 143 KPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK 274
K KRP A+ + +++K ENP L+ EI K + W +++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE 348
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 146 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
P++P + L++ +IK+EN G+ +I ++ G W+++
Sbjct: 374 PRKPPRHFSLFMRENFAKIKAENQGMSNPDIMRELGAKWRNL 415
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 RESLRFDISSHSLRLQFGCV-PVQKLFQNFCHQEKSQNDGQAEASYVRIHAVVKQREGTD 201
+E+ R S + +R C P + Q CH+ S +D AEA + + +Q +G D
Sbjct: 14 KETTRHHNSHNKVRRTHSCPQPFDMIVQALCHRHTSDSDALAEARKALLLMMHRQGKGLD 73
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 268
KR S Y+L+ + R I+ E+P EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 149 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 268
KR S Y+L+ + R I+ E+P EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 641
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 136 HFDFFPDGKNFEIIFELVHNQTVDVENVKKCQILR 32
H DFF DG ++ ++ H++ +DV+++ LR
Sbjct: 579 HIDFFHDGNDYFLVVIDSHSKWIDVQHITSTTALR 613
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,291
Number of Sequences: 59808
Number of extensions: 309395
Number of successful extensions: 750
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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