Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H05
(915 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 51 9e-07
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 50 3e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 48 9e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 48 9e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 48 1e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 46 3e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 45 6e-05
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 45 8e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 1e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.002
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 38 0.009
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 35 0.086
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 32 0.46
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 4.3
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 4.3
At4g13540.1 68417.m02111 expressed protein 29 4.3
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 29 5.7
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 29 5.7
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 29 5.7
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 28 9.9
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 9.9
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
KK+K KPK+P+SAY+++ N R +K EN V E+AK GE WK++ ++
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 35.1 bits (77), Expect = 0.065
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
+KK K + KRP + Y+LW ++K +NP E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
Score = 34.7 bits (76), Expect = 0.086
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWXXXXXXXX 313
+KPK+P S+Y L+ AR+ + E+PG+ + + W + ++K +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQVYNSKAAELM 429
Query: 314 XXXXXDLESYN 346
++E YN
Sbjct: 430 EAYKKEVEEYN 440
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
+K ++KPKRP++A+ ++++ R+ KSE+ G + AK GGE WKS+ ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 289
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 290 XXXXXXXXXXXXXDLESYNAN 352
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 48.0 bits (109), Expect = 9e-06
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMK--DKTEW 289
+K K +KPKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM +K +
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 290 XXXXXXXXXXXXXDLESYNAN 352
+++YN N
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKN 124
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
KK K KPK P+SA++++ N R ++ EN V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 113 AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
A +KK K + KRP S+Y+LW ++K ENP E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 140 DKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 280
+KPK+P S+Y L+ R+++ E PG + WK + ++
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 277
K +KPKRP SA+ +++ RE K ENP V + K G+ WKS+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +2
Query: 122 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 271
KK K + PKR MS +M + R+ IK E+PG+ E+ K G+ W+ M
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +2
Query: 119 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 271
+K VK+ K PK+P +A+ +L+ R+Q + ENP ++ + EI K GE WK+M
Sbjct: 53 KKPVKLQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 131 KMTDKPKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 277
K +KPKRP SA+ +++ R K E+P V + K GGE WKS+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 119 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 280
+K K ++PKRP SA+ ++L R++ NP + V + K G WK+M D+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 IRKKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 280
+ KK K ++PK+P S + ++L+ R++ NP + V + + G+ WK+M ++
Sbjct: 24 VGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 34.7 bits (76), Expect = 0.086
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +2
Query: 32 P*DLTFLHILYVYSLVVYQFKNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSE 211
P +L +HI Y + + +KK K ++ + +++N R+ +++
Sbjct: 25 PVELVRMHICYAMFHRTLAARGFGTQTQAKKKPTNKKKSTTSLTDFAVFMNHFRKSFRTD 84
Query: 212 NPGLRVTEIAKKGGEIWKSMKD 277
G V E +K G E+WKSM +
Sbjct: 85 YNGALVKEGSKIGWEMWKSMTE 106
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 125 KVKMTDKPKRPMSA--YMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 419 QQFSCPFSLVFEPSFRPLRHH 357
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 419 QQFSCPFSLVFEPSFRPLRHH 357
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At4g13540.1 68417.m02111 expressed protein
Length = 210
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 223 KSNRNSQKRR*NLEINERQN*MGTESCQGQGAICKRPRILQCQWRWWR-RGRKEGSKTRE 399
K RNS KRR ++ NE++ + + ++ + +WR R R R+E + R+
Sbjct: 7 KDERNSSKRRIKVKANEQRRRETRRELDEKERVILALKMAETEWRKERKRLREEVKRLRQ 66
Query: 400 KGQE 411
K +E
Sbjct: 67 KMEE 70
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 303 AAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTF 124
A C VL+ + F ++ +S P F + L S + + G++VI+TF
Sbjct: 219 AVLCESEVLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTF 278
Query: 123 FL 118
+
Sbjct: 279 VI 280
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 146 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 277
PKR + Y ++ +IK+EN G +V+ K G +W ++ +
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSS-PKNFGNMWTNLSE 257
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 154 TLRLVRH-FDFFPDGKNFEIIFELVHNQTVDVENVKKC 44
+L LV+H +D + +G+ EII +L+ +T D V KC
Sbjct: 726 SLNLVKHIWDRWENGEAIEIIDKLMGEETYDEGEVMKC 763
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 70 QFGCVPVQKLFQNFCHQEKSQND 138
+F C P+ K F+N+C E D
Sbjct: 239 EFQCYPIFKYFENWCQDENRHGD 261
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 297 FCSHSVLSFIDFQISPPFLAISVT 226
FC+ SV ++FQI PP + VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,108
Number of Sequences: 28952
Number of extensions: 214732
Number of successful extensions: 605
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -