Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_H04
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 105 6e-24
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.51
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 1.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 1.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 2.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.6
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 27 4.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 8.4
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 8.4
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 105 bits (253), Expect = 6e-24
Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +3
Query: 96 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 275
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 276 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 452
K A + +V K W + KW S WA+KL K+ R+Q+ D+DRF + + +R +
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123
Query: 453 ARTAVFKSLK 482
AV K+LK
Sbjct: 124 VNVAVAKALK 133
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.51
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 102 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 188
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 102 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 188
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 410 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 312
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -1
Query: 548 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 402
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +3
Query: 297 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 476
+ L +A + + E+ E++ +KLA +EKR + + K R+++ RA+ A K
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760
Query: 477 LKVKAARA 500
+ ++A A
Sbjct: 761 MSRESAHA 768
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 586 YFLAGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTR 434
YF++ ++ + + +F + G+ F F + TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 223 TPLPGPSTSARVWSITSTTLTNFPFNGPSATRATRPGSTYRAKGMTF 83
TP G ST+ +++ TT PF +AT T PGS G F
Sbjct: 242 TPAFGASTTPFGQNLSGTTNNATPFGTSNATNTT-PGSGLFGGGSAF 287
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 114 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 239
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,492
Number of Sequences: 5004
Number of extensions: 55260
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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